Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS39Q96JC1 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS39Q96JC1 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS39Q96JC1 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 GAPDHP24-201ENST00000328713 983 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 MIR133A2-201ENST00000347538 102 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 RNA5SP433-201ENST00000364491 114 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 RPL24P2-201ENST00000421023 475 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AL035660.1-201ENST00000422041 222 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC009784.1-201ENST00000426484 460 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 BX323845.3-201ENST00000428215 527 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC002553.2-201ENST00000453217 340 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 HSPE1P22-201ENST00000456856 327 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC022215.1-201ENST00000481770 362 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 RPL37P23-201ENST00000492641 294 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 RPSAP51-201ENST00000497462 645 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC025458.1-201ENST00000506046 166 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 UGT2A3P7-201ENST00000510485 734 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 OR5H7P-201ENST00000514084 930 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC027369.2-201ENST00000528030 440 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 OR5AM1P-201ENST00000532136 1032 ntBASIC5.6□□□□□ -1.51
VPS39Q96JC1 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS39Q96JC1 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS39Q96JC1 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 IFIT1P1-201ENST00000400497 1449 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC079097.1-201ENST00000512187 1399 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 Y_RNA.62-201ENST00000362840 99 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC104297.1-201ENST00000393779 870 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 RIMKLBP2-201ENST00000424737 654 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AL022331.1-201ENST00000429025 477 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 IGBP1P3-201ENST00000447449 1000 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AL596266.1-201ENST00000448132 400 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 MTND4LP12-201ENST00000448237 295 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC113398.2-201ENST00000507630 558 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 RN7SKP70-201ENST00000516655 271 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 SEPT10P1-201ENST00000517342 1162 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 OR4A43P-201ENST00000532938 908 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 MTND2P13-201ENST00000577438 1039 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms