Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RPL23AP60-201ENST00000450011 454 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 RAB28P2-201ENST00000454299 641 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 OR56A7P-201ENST00000524865 941 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 RPA2P1-201ENST00000556557 721 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC092868.3-201ENST00000560515 784 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AP005262.1-201ENST00000582646 997 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC004890.3-201ENST00000605566 1095 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL022394.1-201ENST00000606979 292 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC005021.1-201ENST00000608730 355 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 RN7SL261P-201ENST00000613441 282 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC008627.1-201ENST00000517511 1704 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 QRSL1P1-201ENST00000400977 1540 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AL450326.2-201ENST00000421913 1962 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 RNA5SP375-201ENST00000362975 119 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 RNU105B-201ENST00000364478 208 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC115283.1-201ENST00000427353 400 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 RPS3AP38-201ENST00000435889 763 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC016027.4-201ENST00000450866 277 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 RN7SKP238-201ENST00000516483 249 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 MTCYBP19-201ENST00000517463 1124 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC027369.2-201ENST00000528030 440 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC007956.1-201ENST00000555623 542 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 NDUFA5P11-201ENST00000567995 343 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC090236.2-201ENST00000587933 1101 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC096861.1-201ENST00000616652 240 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC145207.9-201ENST00000623802 325 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC019080.5-201ENST00000624891 757 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 AC004076.2-201ENST00000620532 3323 ntBASIC5.66□□□□□ -1.5
VMP1Q96GC9 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
VMP1Q96GC9 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VMP1Q96GC9 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC239868.2-201ENST00000564237 4527 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VMP1Q96GC9 CASC19-284ENST00000642142 1868 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC104118.1-201ENST00000607625 1589 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VMP1Q96GC9 AC009302.1-201ENST00000417147 390 ntBASIC5.65□□□□□ -1.5
VMP1Q96GC9 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms