Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 AC132825.3-201ENST00000562182 4710 ntBASIC4.21□□□□□ -1.74
VPS13CQ709C8 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 MR1-205ENST00000434571 7479 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.21□□□□□ -1.74
VPS13CQ709C8 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.21□□□□□ -1.74
VPS13CQ709C8 NIP7P2-201ENST00000485801 544 ntBASIC4.21□□□□□ -1.74
VPS13CQ709C8 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 AC006338.2-201ENST00000616864 791 ntBASIC4.21□□□□□ -1.74
VPS13CQ709C8 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 AP001885.1-201ENST00000621658 558 ntBASIC4.21□□□□□ -1.74
VPS13CQ709C8 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VPS13CQ709C8 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13CQ709C8 AP003170.5-201ENST00000397185 335 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 MIR4298-201ENST00000584380 73 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 CYCSP1-201ENST00000604815 315 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC244107.2-201ENST00000611773 76 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AL050305.1-201ENST00000399993 1230 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 RPL17P36-201ENST00000420302 549 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 DNAJC19P7-201ENST00000428811 344 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 MTAP-201ENST00000380172 6122 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 KARSP3-201ENST00000571212 1504 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC015799.1-201ENST00000622996 3122 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 RPS29P9-201ENST00000440360 171 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC020910.3-201ENST00000603701 874 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 AC007497.1-201ENST00000610421 561 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 CASC22-202ENST00000628396 802 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 OTUD7B-202ENST00000581312 8872 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 AL590004.4-201ENST00000566733 7060 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS13CQ709C8 OFD1P17-201ENST00000437639 3018 ntBASIC4.2□□□□□ -1.74
VPS13CQ709C8 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
VPS13CQ709C8 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 AF186996.5-201ENST00000418098 904 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 YWHABP1-201ENST00000445359 727 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 RN7SL319P-201ENST00000480656 221 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 AC104971.1-201ENST00000495117 578 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 AC114781.5-201ENST00000615297 108 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.19□□□□□ -1.74
VPS13CQ709C8 NCAM1-222ENST00000615285 6045 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13CQ709C8 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13CQ709C8 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS13CQ709C8 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS13CQ709C8 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms