Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.8□□□□□ -1.64
USF1P22415 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
USF1P22415 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 AL034546.1-201ENST00000623740 3693 ntBASIC4.8□□□□□ -1.64
USF1P22415 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 C4BPAP1-201ENST00000415474 1893 ntBASIC4.8□□□□□ -1.64
USF1P22415 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
USF1P22415 GAPDHP42-201ENST00000406848 981 ntBASIC4.8□□□□□ -1.64
USF1P22415 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.8□□□□□ -1.64
USF1P22415 AL445213.1-201ENST00000412589 747 ntBASIC4.8□□□□□ -1.64
USF1P22415 AL357752.1-201ENST00000412817 349 ntBASIC4.8□□□□□ -1.64
USF1P22415 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.8□□□□□ -1.64
USF1P22415 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.8□□□□□ -1.64
USF1P22415 NPM1P48-201ENST00000436002 853 ntBASIC4.8□□□□□ -1.64
USF1P22415 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 AL390119.1-201ENST00000440329 312 ntBASIC4.8□□□□□ -1.64
USF1P22415 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 AL603882.1-201ENST00000463059 681 ntBASIC4.8□□□□□ -1.64
USF1P22415 MRE11P1-201ENST00000464884 2127 ntBASIC4.8□□□□□ -1.64
USF1P22415 RN7SL51P-201ENST00000468230 285 ntBASIC4.8□□□□□ -1.64
USF1P22415 COPS8P2-201ENST00000473228 627 ntBASIC4.8□□□□□ -1.64
USF1P22415 RN7SL583P-201ENST00000475692 287 ntBASIC4.8□□□□□ -1.64
USF1P22415 RPS3AP15-201ENST00000483874 781 ntBASIC4.8□□□□□ -1.64
USF1P22415 RN7SL570P-201ENST00000484405 292 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC4.8□□□□□ -1.64
USF1P22415 RN7SL547P-201ENST00000490793 290 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.8□□□□□ -1.64
USF1P22415 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.8□□□□□ -1.64
USF1P22415 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.8□□□□□ -1.64
USF1P22415 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.8□□□□□ -1.64
USF1P22415 AC002456.2-201ENST00000509356 380 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 AC074255.1-201ENST00000511259 501 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC136777.2-201ENST00000522979 358 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 FKBP1AP1-201ENST00000594588 318 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC010245.2-201ENST00000606908 1167 ntBASIC4.8□□□□□ -1.64
USF1P22415 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 AC016769.4-201ENST00000616893 535 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC005840.5-201ENST00000619166 599 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC008115.4-201ENST00000619780 775 ntBASIC4.8□□□□□ -1.64
USF1P22415 MIR8080-201ENST00000622224 89 ntBASIC4.8□□□□□ -1.64
USF1P22415 AC018445.2-201ENST00000622987 260 ntBASIC4.8□□□□□ -1.64
USF1P22415 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.8□□□□□ -1.64
USF1P22415 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 AC130304.1-201ENST00000622942 2385 ntBASIC4.8□□□□□ -1.64
USF1P22415 AL355488.2-201ENST00000609909 2850 ntBASIC4.8□□□□□ -1.64
USF1P22415 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 AL158152.1-201ENST00000602652 1435 ntBASIC4.8□□□□□ -1.64
USF1P22415 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
USF1P22415 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USF1P22415 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
USF1P22415 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.79□□□□□ -1.64
USF1P22415 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
USF1P22415 AL161756.3-201ENST00000641216 2071 ntBASIC4.79□□□□□ -1.64
USF1P22415 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.79□□□□□ -1.64
USF1P22415 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USF1P22415 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USF1P22415 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.79□□□□□ -1.64
USF1P22415 SNORA70-201ENST00000384436 135 ntBASIC4.79□□□□□ -1.64
USF1P22415 RPL11P3-201ENST00000395256 523 ntBASIC4.79□□□□□ -1.64
USF1P22415 AC009804.1-201ENST00000400949 179 ntBASIC4.79□□□□□ -1.64
USF1P22415 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.79□□□□□ -1.64
USF1P22415 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC4.79□□□□□ -1.64
USF1P22415 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.79□□□□□ -1.64
USF1P22415 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.79□□□□□ -1.64
USF1P22415 RPS27P18-201ENST00000431701 247 ntBASIC4.79□□□□□ -1.64
USF1P22415 USP24P1-201ENST00000433802 779 ntBASIC4.79□□□□□ -1.64
USF1P22415 RPS12P17-201ENST00000438591 377 ntBASIC4.79□□□□□ -1.64
USF1P22415 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.79□□□□□ -1.64
USF1P22415 AL157777.1-201ENST00000468100 304 ntBASIC4.79□□□□□ -1.64
USF1P22415 RPL35AP19-201ENST00000469425 329 ntBASIC4.79□□□□□ -1.64
USF1P22415 RPL32P9-201ENST00000487963 407 ntBASIC4.79□□□□□ -1.64
USF1P22415 NPM1P28-201ENST00000492269 840 ntBASIC4.79□□□□□ -1.64
USF1P22415 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
USF1P22415 AC006499.3-201ENST00000506077 748 ntBASIC4.79□□□□□ -1.64
USF1P22415 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.79□□□□□ -1.64
USF1P22415 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.79□□□□□ -1.64
USF1P22415 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.79□□□□□ -1.64
USF1P22415 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
USF1P22415 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC4.79□□□□□ -1.64
USF1P22415 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.79□□□□□ -1.64
USF1P22415 AC063977.5-201ENST00000601044 974 ntBASIC4.79□□□□□ -1.64
USF1P22415 AC090607.5-201ENST00000615692 224 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms