Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 AL121594.2-201ENST00000541658 472 ntBASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 NLRP3P1-201ENST00000622303 1785 ntBASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.74
SHROOM4Q9ULL8 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 HSPA8P14-201ENST00000552265 1805 ntBASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 AC105399.1-202ENST00000447303 205 ntBASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 AC079080.1-201ENST00000479841 822 ntBASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 RPL27-207ENST00000590864 569 ntTSL 2 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 WWOX-217ENST00000620008 450 ntTSL 2 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 AL353662.3-201ENST00000625131 237 ntBASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC10.45□□□□□ -0.74
SHROOM4Q9ULL8 AC011493.1-201ENST00000596753 1632 ntBASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 RNA5SP251-201ENST00000410614 137 ntBASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 RPL23AP18-201ENST00000416139 468 ntBASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 AC002075.1-201ENST00000457396 676 ntBASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 RN7SL385P-201ENST00000468873 276 ntBASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
SHROOM4Q9ULL8 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AC073410.1-201ENST00000435125 589 ntBASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 RN7SKP99-201ENST00000517028 307 ntBASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AC115989.2-201ENST00000578640 563 ntBASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AL513327.3-201ENST00000602618 469 ntBASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 AP000346.3-201ENST00000622821 210 ntBASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
SHROOM4Q9ULL8 RNU1-32P-201ENST00000363937 159 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 CDC123-202ENST00000378900 933 ntTSL 5 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 TRY2P-201ENST00000448860 689 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 PDCL3P4-201ENST00000489621 720 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 FTH1P8-201ENST00000498161 514 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 RNU6-941P-201ENST00000516346 108 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AC008745.1-201ENST00000604064 271 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AL023583.1-201ENST00000607518 1143 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AC109583.2-201ENST00000617367 129 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AC138627.1-204ENST00000641894 765 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AC140479.2-201ENST00000421567 3130 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms