Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 RN7SKP292-201ENST00000365522 317 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 DBIP1-201ENST00000401435 260 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 OR6E1P-201ENST00000414424 923 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 Z93019.1-201ENST00000416450 973 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 SUMO2P3-201ENST00000438311 288 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AL672138.1-201ENST00000450604 1015 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC084754.1-201ENST00000463466 464 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC092754.1-201ENST00000472975 479 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC007998.1-201ENST00000474156 672 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 SCARNA16.4-201ENST00000516956 187 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 RN7SKP99-201ENST00000517028 307 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 RN7SL290P-201ENST00000578661 300 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC109583.2-201ENST00000617367 129 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 AC012078.1-201ENST00000405035 1646 ntBASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS29Q9UBQ0 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC093671.1-201ENST00000624981 2929 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 RNU1-19P-201ENST00000363306 165 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 RNA5SP510-201ENST00000364697 99 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 RNA5SP284-201ENST00000384547 118 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 SDHDP6-201ENST00000414693 480 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 TNPO1P1-201ENST00000423641 1138 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 RPL19P16-201ENST00000433839 588 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC090804.1-201ENST00000448870 490 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 RPS24P16-201ENST00000497294 392 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 HMGB1P44-201ENST00000508597 572 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC098976.1-201ENST00000513014 541 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC078878.1-201ENST00000539832 958 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 RN7SL356P-201ENST00000582228 248 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 MIR4505-201ENST00000582238 73 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AL359742.1-201ENST00000622497 540 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AP003400.3-201ENST00000624904 346 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 AC099654.6-201ENST00000636487 512 ntBASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS29Q9UBQ0 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS29Q9UBQ0 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS29Q9UBQ0 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
VPS29Q9UBQ0 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS29Q9UBQ0 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS29Q9UBQ0 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
VPS29Q9UBQ0 OR1L6-202ENST00000373684 1044 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms