Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 GAPDHP24-201ENST00000328713 983 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 SNORA64.1-201ENST00000362600 132 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 AL391422.1-201ENST00000402155 436 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 NPM1P4-201ENST00000414095 812 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 MRPL53P1-201ENST00000414323 319 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 SPRYD7P1-201ENST00000443861 570 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 MED28P3-201ENST00000444288 531 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC005297.1-201ENST00000444765 862 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXD4P09016 SIAH1P1-201ENST00000479411 923 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 RN7SL570P-201ENST00000484405 292 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 COX6B1P2-201ENST00000489624 230 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXD4P09016 DUTP7-201ENST00000507982 486 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC138866.2-201ENST00000508650 584 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 BX510359.5-201ENST00000515651 304 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 SNORA43.3-201ENST00000517240 103 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 NRBF2P4-201ENST00000520874 850 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 OR8Q1P-201ENST00000526467 655 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 HMGB1P42-201ENST00000532126 553 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 GARSP1-201ENST00000570895 719 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC015802.2-201ENST00000589690 189 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC092944.2-201ENST00000605443 889 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC008833.1-201ENST00000611633 691 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 AP003072.5-201ENST00000623872 773 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 CU639417.4-201ENST00000623928 207 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXD4P09016 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXD4P09016 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXD4P09016 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 AC092376.2-201ENST00000622621 4116 ntBASIC5.21□□□□□ -1.58
HOXD4P09016 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 AC114876.1-201ENST00000490962 1366 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 SNORA74A-201ENST00000364089 198 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 MIR937-201ENST00000401271 86 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 GAPDHP42-201ENST00000406848 981 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.2□□□□□ -1.58
HOXD4P09016 AC113412.1-201ENST00000425840 504 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AC127526.2-201ENST00000426436 775 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AL136231.1-201ENST00000429407 730 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.2□□□□□ -1.58
HOXD4P09016 HMGB3P24-201ENST00000433260 622 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AL731534.1-201ENST00000434711 269 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXD4P09016 FRG2FP-204ENST00000453982 852 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AL603882.1-201ENST00000463059 681 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 RN7SL799P-201ENST00000475891 298 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AC023424.1-201ENST00000496058 459 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXD4P09016 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXD4P09016 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 SCARNA6.1-201ENST00000516989 238 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXD4P09016 AC026616.1-201ENST00000523157 525 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXD4P09016 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 AC241377.1-201ENST00000619797 406 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXD4P09016 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXD4P09016 HSPD1P7-201ENST00000447985 1686 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXD4P09016 BCORP1-203ENST00000513194 5093 ntBASIC5.2□□□□□ -1.58
HOXD4P09016 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXD4P09016 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms