Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LMX1BO60663 TMSB4XP2-201ENST00000335179 210 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 MIR143-201ENST00000385300 106 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LMX1BO60663 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.09□□□□□ -1.59
LMX1BO60663 RN7SKP293-201ENST00000411389 296 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 RPL35AP3-201ENST00000414680 288 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AL512504.1-201ENST00000415494 778 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.09□□□□□ -1.59
LMX1BO60663 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.09□□□□□ -1.59
LMX1BO60663 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.09□□□□□ -1.59
LMX1BO60663 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.09□□□□□ -1.59
LMX1BO60663 MTCYBP15-201ENST00000433123 1127 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AL445928.1-201ENST00000435545 222 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 NPM1P48-201ENST00000436002 853 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
LMX1BO60663 TRIM60P16-201ENST00000444048 694 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.09□□□□□ -1.59
LMX1BO60663 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.09□□□□□ -1.59
LMX1BO60663 RN7SL269P-201ENST00000467795 305 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AL157777.1-201ENST00000468100 304 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 RN7SL193P-201ENST00000491708 276 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.09□□□□□ -1.59
LMX1BO60663 TPT1P8-201ENST00000510120 555 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.09□□□□□ -1.59
LMX1BO60663 RNU6-964P-201ENST00000516524 69 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.09□□□□□ -1.59
LMX1BO60663 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.09□□□□□ -1.59
LMX1BO60663 AC138701.1-201ENST00000524329 714 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LMX1BO60663 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.09□□□□□ -1.59
LMX1BO60663 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
LMX1BO60663 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.09□□□□□ -1.59
LMX1BO60663 AC106785.3-201ENST00000564064 847 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 SNORD95-201ENST00000579879 68 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AC005244.1-201ENST00000582566 339 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 OR7A8P-201ENST00000595427 913 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AL513327.3-201ENST00000602618 469 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 FAM72A-208ENST00000607379 1139 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 AC027449.1-201ENST00000608890 407 ntBASIC5.09□□□□□ -1.59
LMX1BO60663 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LMX1BO60663 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
LMX1BO60663 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.6
LMX1BO60663 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
LMX1BO60663 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.09□□□□□ -1.6
LMX1BO60663 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
LMX1BO60663 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
LMX1BO60663 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.09□□□□□ -1.6
LMX1BO60663 AC232271.1-201ENST00000602455 2715 ntBASIC5.09□□□□□ -1.6
LMX1BO60663 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.09□□□□□ -1.6
LMX1BO60663 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.09□□□□□ -1.6
LMX1BO60663 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.09□□□□□ -1.6
LMX1BO60663 AC114774.1-201ENST00000507410 1770 ntBASIC5.09□□□□□ -1.6
LMX1BO60663 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
LMX1BO60663 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
LMX1BO60663 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 AP004607.3-201ENST00000530354 3915 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC140479.2-201ENST00000421567 3130 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 WDR95P-201ENST00000425638 1542 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 RBPJP7-201ENST00000442803 1447 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 RBPJP5-201ENST00000449433 1447 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LMX1BO60663 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
LMX1BO60663 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
LMX1BO60663 RNA5SP91-201ENST00000390902 119 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 U3.25-201ENST00000391209 220 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AL096711.1-201ENST00000404780 554 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 MTATP6P31-201ENST00000406985 692 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 RPS3AP2-201ENST00000407190 754 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 MIR1203-201ENST00000408812 85 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.08□□□□□ -1.6
LMX1BO60663 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.08□□□□□ -1.6
LMX1BO60663 METTL15P3-201ENST00000415522 1221 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 OR51A6P-201ENST00000418680 1004 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 RPS4XP5-201ENST00000419038 768 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 BX119321.1-201ENST00000428912 797 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 NDUFS5P5-201ENST00000437256 321 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC064862.4-201ENST00000442180 334 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC093801.2-201ENST00000503966 1050 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC008638.1-201ENST00000506035 866 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.08□□□□□ -1.6
LMX1BO60663 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.08□□□□□ -1.6
LMX1BO60663 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.08□□□□□ -1.6
LMX1BO60663 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.08□□□□□ -1.6
LMX1BO60663 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms