Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 Y_RNA.695-201ENST00000516715 107 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC087752.2-201ENST00000521219 281 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA3O43365 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC083923.1-201ENST00000523708 376 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC025260.1-201ENST00000548858 430 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 HNRNPCP1-201ENST00000556181 766 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC006362.1-201ENST00000567392 174 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXA3O43365 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC092354.2-201ENST00000607786 514 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AC097505.1-201ENST00000610199 565 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC024595.1-201ENST00000623088 387 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AL359740.1-201ENST00000624340 592 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC022507.1-201ENST00000548349 1505 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 AC025263.3-201ENST00000622965 1396 ntBASIC5.52□□□□□ -1.53
HOXA3O43365 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA3O43365 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA3O43365 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
HOXA3O43365 NF1P8-201ENST00000415351 1461 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA3O43365 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA3O43365 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA3O43365 AC092821.3-202ENST00000641304 2767 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
HOXA3O43365 AL512329.1-201ENST00000404600 1592 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA3O43365 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 RNU6-452P-201ENST00000384406 107 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 MT-TH-201ENST00000387441 69 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 FDPSP5-201ENST00000399474 1057 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 RNU6-920P-201ENST00000410926 92 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 UBE2V1P10-201ENST00000414685 269 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 NMNAT1P2-201ENST00000435192 860 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXA3O43365 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXA3O43365 AC093166.3-201ENST00000448785 303 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 NDUFAF4P4-201ENST00000454883 502 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AKR1D1P1-201ENST00000457236 936 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXA3O43365 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 AC131392.1-201ENST00000506490 633 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AC138866.2-201ENST00000508650 584 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 GUSBP9-201ENST00000510138 584 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 SUMO2P7-201ENST00000511179 285 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXA3O43365 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 RNU6-1004P-201ENST00000516584 111 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 KCTD9P4-201ENST00000526766 1166 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 HIGD1AP10-201ENST00000527837 282 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXA3O43365 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXA3O43365 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC5.51□□□□□ -1.53
HOXA3O43365 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXA3O43365 AC023827.2-201ENST00000566880 1061 ntBASIC5.51□□□□□ -1.53
HOXA3O43365 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms