Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 AC060766.5-201ENST00000590539 871 ntBASIC18.95■□□□□ 0.62
VPS4AQ9UN37 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4AQ9UN37 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 SNORA78-201ENST00000459373 127 ntBASIC18.94■□□□□ 0.62
VPS4AQ9UN37 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 CYP2T3P-201ENST00000601990 817 ntBASIC18.94■□□□□ 0.62
VPS4AQ9UN37 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4AQ9UN37 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 HLA-B-256ENST00000639848 1089 ntBASIC18.93■□□□□ 0.62
VPS4AQ9UN37 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 AC125437.2-201ENST00000625180 2167 ntBASIC18.93■□□□□ 0.62
VPS4AQ9UN37 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
VPS4AQ9UN37 AL158211.5-201ENST00000623583 2518 ntBASIC18.93■□□□□ 0.62
VPS4AQ9UN37 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.92■□□□□ 0.62
VPS4AQ9UN37 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 KRT18P21-201ENST00000515767 1272 ntBASIC18.92■□□□□ 0.62
VPS4AQ9UN37 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms