Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 AP003041.3-201ENST00000527151 707 ntBASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC25.57■■□□□ 1.68
SHANK3Q9BYB0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 BX664615.1-201ENST00000443558 458 ntBASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHANK3Q9BYB0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 KRT8P41-201ENST00000533985 1514 ntBASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 PCED1CP-201ENST00000419887 785 ntBASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 KRT18P56-201ENST00000507275 550 ntBASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHANK3Q9BYB0 TSPY5P-201ENST00000426936 936 ntBASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 AC069148.1-201ENST00000608741 768 ntBASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 AC130371.2-201ENST00000619443 611 ntBASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 TSPY17P-201ENST00000450329 467 ntBASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 CA15P1-201ENST00000481698 905 ntBASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHANK3Q9BYB0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SHANK3Q9BYB0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 AC026396.1-201ENST00000419388 421 ntBASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 KRT18P48-201ENST00000434763 852 ntBASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 AL671277.2-201ENST00000458060 996 ntBASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 FEM1AP1-201ENST00000431297 1995 ntBASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SHANK3Q9BYB0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
SHANK3Q9BYB0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC25.51■■□□□ 1.68
SHANK3Q9BYB0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 AC092647.4-201ENST00000457211 535 ntBASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 AC093458.2-201ENST00000623150 629 ntBASIC25.51■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms