Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 RNA5SP419-201ENST00000515908 135 ntBASIC19.5■□□□□ 0.71
VPS13AQ96RL7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 AL023973.1-201ENST00000624619 620 ntBASIC19.5■□□□□ 0.71
VPS13AQ96RL7 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.5■□□□□ 0.71
VPS13AQ96RL7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS13AQ96RL7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 AL024507.2-201ENST00000606070 2574 ntBASIC19.49■□□□□ 0.71
VPS13AQ96RL7 PRELID1P1-202ENST00000567272 903 ntBASIC19.49■□□□□ 0.71
VPS13AQ96RL7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 AP006587.1-201ENST00000534129 1502 ntBASIC19.49■□□□□ 0.71
VPS13AQ96RL7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 AC242852.2-201ENST00000615738 1807 ntBASIC19.49■□□□□ 0.71
VPS13AQ96RL7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13AQ96RL7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.48■□□□□ 0.71
VPS13AQ96RL7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 SPDYE15P-201ENST00000424157 909 ntBASIC19.48■□□□□ 0.71
VPS13AQ96RL7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13AQ96RL7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 Z85996.1-201ENST00000494644 937 ntBASIC19.47■□□□□ 0.71
VPS13AQ96RL7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13AQ96RL7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 GCSHP2-201ENST00000560971 527 ntBASIC19.46■□□□□ 0.71
VPS13AQ96RL7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 SLC25A6P4-201ENST00000586535 553 ntBASIC19.46■□□□□ 0.71
VPS13AQ96RL7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms