Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP000974.1-201ENST00000623909 2387 ntBASIC19.66■□□□□ 0.74
VPS39Q96JC1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS39Q96JC1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS39Q96JC1 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 AC073111.5-205ENST00000641717 521 ntBASIC19.65■□□□□ 0.74
VPS39Q96JC1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS39Q96JC1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS39Q96JC1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS39Q96JC1 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS39Q96JC1 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS39Q96JC1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS39Q96JC1 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 GPX1P1-201ENST00000388829 606 ntBASIC19.64■□□□□ 0.73
VPS39Q96JC1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS39Q96JC1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
VPS39Q96JC1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 MKRN4P-201ENST00000444706 1521 ntBASIC19.63■□□□□ 0.73
VPS39Q96JC1 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 AF201337.1-201ENST00000520239 748 ntBASIC19.63■□□□□ 0.73
VPS39Q96JC1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 AL137784.2-201ENST00000607332 1000 ntBASIC19.63■□□□□ 0.73
VPS39Q96JC1 IKBKGP1-201ENST00000612193 1073 ntBASIC19.63■□□□□ 0.73
VPS39Q96JC1 AL050303.2-201ENST00000619798 666 ntBASIC19.63■□□□□ 0.73
VPS39Q96JC1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VPS39Q96JC1 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 AC120498.9-201ENST00000339021 3867 ntBASIC19.63■□□□□ 0.73
VPS39Q96JC1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS39Q96JC1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms