Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN9P43378 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN9P43378 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.43■□□□□ 0.86
PTPN9P43378 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.43■□□□□ 0.86
PTPN9P43378 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN9P43378 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.43■□□□□ 0.86
PTPN9P43378 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.43■□□□□ 0.86
PTPN9P43378 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.43■□□□□ 0.86
PTPN9P43378 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
PTPN9P43378 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN9P43378 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
PTPN9P43378 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
PTPN9P43378 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.42■□□□□ 0.86
PTPN9P43378 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.42■□□□□ 0.86
PTPN9P43378 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
PTPN9P43378 AC006058.3-201ENST00000606217 1069 ntBASIC20.42■□□□□ 0.86
PTPN9P43378 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 AC073648.6-201ENST00000641589 218 ntBASIC20.42■□□□□ 0.86
PTPN9P43378 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.42■□□□□ 0.86
PTPN9P43378 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.42■□□□□ 0.86
PTPN9P43378 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.42■□□□□ 0.86
PTPN9P43378 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.42■□□□□ 0.86
PTPN9P43378 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
PTPN9P43378 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
PTPN9P43378 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN9P43378 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
PTPN9P43378 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.41■□□□□ 0.86
PTPN9P43378 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
PTPN9P43378 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN9P43378 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN9P43378 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.41■□□□□ 0.86
PTPN9P43378 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN9P43378 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN9P43378 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PTPN9P43378 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.4■□□□□ 0.86
PTPN9P43378 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN9P43378 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN9P43378 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.4■□□□□ 0.86
PTPN9P43378 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.4■□□□□ 0.86
PTPN9P43378 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.4■□□□□ 0.86
PTPN9P43378 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN9P43378 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN9P43378 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN9P43378 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN9P43378 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN9P43378 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN9P43378 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN9P43378 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN9P43378 NBPF21P-201ENST00000425093 1451 ntBASIC20.39■□□□□ 0.85
PTPN9P43378 KRT8P8-201ENST00000434750 1448 ntBASIC20.39■□□□□ 0.85
PTPN9P43378 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
PTPN9P43378 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.39■□□□□ 0.85
PTPN9P43378 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.39■□□□□ 0.85
PTPN9P43378 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PTPN9P43378 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN9P43378 AC128676.1-201ENST00000454392 318 ntBASIC20.39■□□□□ 0.85
PTPN9P43378 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.39■□□□□ 0.85
PTPN9P43378 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN9P43378 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 RN7SL471P-201ENST00000580476 299 ntBASIC20.39■□□□□ 0.85
PTPN9P43378 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.39■□□□□ 0.85
PTPN9P43378 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.39■□□□□ 0.85
PTPN9P43378 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN9P43378 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PTPN9P43378 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN9P43378 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN9P43378 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PTPN9P43378 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.38■□□□□ 0.85
PTPN9P43378 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms