Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 AC064862.7-201ENST00000604520 867 ntBASIC15.32■□□□□ 0.04
COL6A5A8TX70 AC055717.3-201ENST00000622967 595 ntBASIC15.32■□□□□ 0.04
COL6A5A8TX70 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 AC127496.7-201ENST00000625110 1798 ntBASIC15.32■□□□□ 0.04
COL6A5A8TX70 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A5A8TX70 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A5A8TX70 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 AL773604.1-201ENST00000617417 272 ntBASIC15.31■□□□□ 0.04
COL6A5A8TX70 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 TSSC2-201ENST00000450217 709 ntBASIC15.31■□□□□ 0.04
COL6A5A8TX70 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
COL6A5A8TX70 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A5A8TX70 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AP000867.3-201ENST00000524675 377 ntBASIC15.3■□□□□ 0.04
COL6A5A8TX70 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 PMS2P7-201ENST00000506558 1336 ntBASIC15.3■□□□□ 0.04
COL6A5A8TX70 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AC011484.1-201ENST00000377652 1995 ntBASIC15.3■□□□□ 0.04
COL6A5A8TX70 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A5A8TX70 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 AL691403.2-201ENST00000618460 490 ntBASIC15.3■□□□□ 0.04
COL6A5A8TX70 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.3■□□□□ 0.04
COL6A5A8TX70 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 FAM99A-202ENST00000538190 1989 ntBASIC15.29■□□□□ 0.04
COL6A5A8TX70 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 AL162741.1-201ENST00000565563 1558 ntBASIC15.29■□□□□ 0.04
COL6A5A8TX70 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 KRT18P67-201ENST00000432816 1264 ntBASIC15.29■□□□□ 0.04
COL6A5A8TX70 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms