Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC023055.1-201ENST00000546837 1807 ntAPPRIS P1 TSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC004947.1-201ENST00000420912 2781 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 GTF2H1-210ENST00000530496 1700 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 EEF1A1P5-201ENST00000436459 1389 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC104964.2-201ENST00000562242 4641 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 HDAC9-212ENST00000432645 3099 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 RNU1-11P-201ENST00000383975 164 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 SNORD116-23-201ENST00000384645 92 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 PIGFP2-201ENST00000421400 651 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 GAPDHP51-201ENST00000426454 1000 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC005534.2-201ENST00000431047 433 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC002486.1-201ENST00000435098 391 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AL137074.1-201ENST00000442640 465 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 MTCO3P20-201ENST00000454926 688 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 RN7SL55P-201ENST00000464534 297 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC007547.2-201ENST00000468802 360 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC009269.1-202ENST00000484381 469 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 THAP6-203ENST00000502620 582 ntTSL 3 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 HSPA8P13-201ENST00000523715 472 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC022832.1-201ENST00000530718 645 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AP003034.1-201ENST00000534621 422 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 RPS3AP23-202ENST00000574601 686 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 MIR4637-201ENST00000582405 84 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC140658.6-201ENST00000603958 201 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AL136139.1-201ENST00000605568 222 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC090525.3-201ENST00000605601 189 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AC103710.4-201ENST00000609301 899 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 MAPK10-345ENST00000641724 2980 ntAPPRIS P2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 HDAC1P1-201ENST00000455482 1445 ntBASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 VCAM1-204ENST00000370119 2483 ntTSL 2 BASIC8.01□□□□□ -1.13
LIMD1Q9UGP4 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
LIMD1Q9UGP4 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
LIMD1Q9UGP4 HINFP-201ENST00000350777 3163 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
LIMD1Q9UGP4 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
LIMD1Q9UGP4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC8□□□□□ -1.13
LIMD1Q9UGP4 OR4A15-201ENST00000314706 1035 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 Y_RNA.72-201ENST00000362894 103 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 RNU6-483P-201ENST00000384088 108 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 RNU6-533P-201ENST00000384144 107 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 Y_RNA.481-201ENST00000384373 102 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 SNORA51.12-201ENST00000384448 134 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 YWHAZP3-201ENST00000415292 738 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 SNRPEP10-201ENST00000420249 274 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 HSPD1P12-201ENST00000429127 1069 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC109583.1-201ENST00000432156 268 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 ARPC3P1-201ENST00000437218 533 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 RPS27AP15-201ENST00000447672 466 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 RPL7P59-201ENST00000447700 943 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 FABP3P2-201ENST00000453169 399 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC135721.2-201ENST00000464237 300 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 RN7SL569P-201ENST00000494652 288 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC012170.1-201ENST00000495139 359 ntBASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC8□□□□□ -1.13
LIMD1Q9UGP4 AC092349.1-201ENST00000504903 310 ntBASIC8□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms