Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 MIR621-201ENST00000384919 96 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 U3.23-201ENST00000391132 200 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 RNA5SP241-201ENST00000391326 114 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AL445213.1-201ENST00000412589 747 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC079809.1-201ENST00000415468 276 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AL672138.1-201ENST00000450604 1015 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC135999.1-201ENST00000478962 479 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC027026.1-201ENST00000532323 742 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 MIR1273E-201ENST00000581165 102 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 RN7SL356P-201ENST00000582228 248 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 MIR4505-201ENST00000582238 73 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 OR8A1-204ENST00000642111 1145 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 CDY11P-201ENST00000447168 1651 ntBASIC5.43□□□□□ -1.54
TREX1Q9NSU2 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TREX1Q9NSU2 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AL078621.3-201ENST00000623707 2042 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 SDHDP6-201ENST00000414693 480 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 TNPO1P1-201ENST00000423641 1138 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 SRSF1P1-201ENST00000424058 520 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 PRUNEP1-201ENST00000425846 705 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 HSPD1P12-201ENST00000429127 1069 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 FTLP19-201ENST00000433300 394 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 HMGN1P36-201ENST00000446623 298 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 CDC42P3-201ENST00000518493 633 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC078878.1-201ENST00000539832 958 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 NDUFA5P11-201ENST00000567995 343 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 RN7SL290P-201ENST00000578661 300 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AL034374.2-201ENST00000605281 548 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 RNA5SP440-201ENST00000612665 119 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC099654.6-201ENST00000636487 512 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC073869.7-201ENST00000640874 297 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 AC007342.5-201ENST00000571340 2142 ntBASIC5.42□□□□□ -1.54
TREX1Q9NSU2 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
TREX1Q9NSU2 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TREX1Q9NSU2 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
TREX1Q9NSU2 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
TREX1Q9NSU2 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TREX1Q9NSU2 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms