Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AK5-208ENST00000478255 556 ntTSL 2 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 RNU6-551P-201ENST00000516661 103 ntBASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AC068305.2-201ENST00000550567 1205 ntBASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 AC005021.1-201ENST00000608730 355 ntBASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.57□□□□□ -1.2
CHMP4AQ9BY43 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AL034374.1-201ENST00000406329 351 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 RPS3P2-201ENST00000421346 701 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC023141.8-201ENST00000442554 208 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC016724.1-201ENST00000453215 421 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AL354710.1-201ENST00000453641 246 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 NXT1P1-201ENST00000458481 316 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC007998.1-201ENST00000474156 672 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC074255.1-201ENST00000511259 501 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 SNORA70.20-201ENST00000516848 126 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 NPM1P35-201ENST00000533043 868 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC068020.1-201ENST00000594215 661 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AC130352.1-201ENST00000602979 661 ntBASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CHMP4AQ9BY43 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 PHKBP1-201ENST00000450951 1951 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 RNA5SP284-201ENST00000384547 118 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 OR5M12P-201ENST00000423388 929 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 MTCO1P57-201ENST00000432182 261 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AL365220.1-201ENST00000432923 399 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 PCBP2P1-201ENST00000437262 977 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AC015983.1-201ENST00000441577 373 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 RPL10P17-201ENST00000453852 316 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AC079080.1-201ENST00000479841 822 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 NENFP3-201ENST00000503735 313 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SNORA70.11-201ENST00000515987 138 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SNORA70.13-201ENST00000516116 138 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 IGBP1P1-201ENST00000554337 1009 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 NANOGP3-201ENST00000605855 286 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AL138960.1-201ENST00000613838 513 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AC119674.1-220ENST00000641502 1048 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 152.8 ms