Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009120.7-201ENST00000623452 780 ntBASIC6.35□□□□□ -1.39
USP39Q53GS9 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.35□□□□□ -1.39
USP39Q53GS9 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.35□□□□□ -1.39
USP39Q53GS9 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
USP39Q53GS9 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC021755.1-201ENST00000559747 1447 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC010624.4-201ENST00000597606 1351 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC116158.1-201ENST00000560231 2129 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP39Q53GS9 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 TMSB4XP4-201ENST00000323496 618 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 FAM32BP-201ENST00000344033 333 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 OR5H2-201ENST00000355273 945 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 RNU4-28P-201ENST00000364739 141 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
USP39Q53GS9 MIR1302-8-201ENST00000408342 128 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 TEX41-203ENST00000420472 765 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC010099.3-201ENST00000423896 409 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 NANOGP5-201ENST00000424456 877 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 MTND6P12-201ENST00000428247 522 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AC023141.3-201ENST00000436698 278 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 LDHAP2-201ENST00000437325 985 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC6.34□□□□□ -1.39
USP39Q53GS9 MTCO2P7-201ENST00000446518 666 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 HIGD1AP16-201ENST00000450986 258 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 RPL23AP64-201ENST00000469465 435 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 RPL34P33-201ENST00000486062 334 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
USP39Q53GS9 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
USP39Q53GS9 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC6.34□□□□□ -1.39
USP39Q53GS9 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 RPA2P1-201ENST00000556557 721 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AC135626.1-201ENST00000556983 435 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 HMGN2P47-201ENST00000559378 272 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC012213.3-201ENST00000577199 777 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
USP39Q53GS9 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC6.34□□□□□ -1.39
USP39Q53GS9 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC6.34□□□□□ -1.39
USP39Q53GS9 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 SNORA35B-201ENST00000607417 129 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 OR7A19P-201ENST00000608051 733 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 RFPL4AP6-201ENST00000616792 846 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AL512652.1-201ENST00000619006 500 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 AL669942.2-201ENST00000620352 697 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 MRPL57P1-201ENST00000621486 265 ntBASIC6.34□□□□□ -1.39
USP39Q53GS9 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.34□□□□□ -1.39
USP39Q53GS9 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP39Q53GS9 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
USP39Q53GS9 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP39Q53GS9 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.34□□□□□ -1.4
USP39Q53GS9 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.4
USP39Q53GS9 AC027279.4-201ENST00000624371 2072 ntBASIC6.34□□□□□ -1.4
USP39Q53GS9 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC091305.2-201ENST00000624049 1576 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms