Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC4.07□□□□□ -1.76
FOXA3P55318 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.06□□□□□ -1.76
FOXA3P55318 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
FOXA3P55318 QRSL1P1-201ENST00000400977 1540 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
FOXA3P55318 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 STX3-208ENST00000641815 3236 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 RNA5SP30-201ENST00000365552 115 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
FOXA3P55318 ARSFP1-201ENST00000398758 477 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 PSMA6P1-201ENST00000400275 741 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 RPS6P23-201ENST00000413224 722 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AL354890.1-201ENST00000413730 346 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.06□□□□□ -1.76
FOXA3P55318 MTND6P12-201ENST00000428247 522 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 KCTD9P1-201ENST00000430462 1167 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC4.06□□□□□ -1.76
FOXA3P55318 AC135999.1-201ENST00000478962 479 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 RPL15P21-201ENST00000495592 567 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 NIFKP7-201ENST00000503365 834 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA3P55318 HMGN1P16-201ENST00000508308 283 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 AC131935.1-201ENST00000524621 333 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA3P55318 RN7SL435P-201ENST00000584418 282 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXA3P55318 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 Z93930.3-201ENST00000607919 749 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AC073575.2-201ENST00000614212 627 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 MIR6736-201ENST00000616799 59 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AC074140.1-201ENST00000621617 208 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 AL136228.1-201ENST00000622221 319 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXA3P55318 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
FOXA3P55318 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
FOXA3P55318 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXA3P55318 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 AL022322.2-201ENST00000624072 20397 ntBASIC4.06□□□□□ -1.76
FOXA3P55318 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXA3P55318 AC011503.2-201ENST00000594230 1500 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA3P55318 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA3P55318 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA3P55318 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA3P55318 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA3P55318 AL159987.1-201ENST00000347911 293 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 RNU4-44P-201ENST00000363050 141 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
FOXA3P55318 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
FOXA3P55318 AL078599.1-201ENST00000402075 293 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 BX119321.1-201ENST00000428912 797 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC124944.2-201ENST00000429866 1242 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC046176.1-201ENST00000435260 1170 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA3P55318 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC005077.1-201ENST00000449226 375 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC090589.1-201ENST00000473109 362 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.05□□□□□ -1.76
FOXA3P55318 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA3P55318 RNA5SP75-201ENST00000516841 111 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA3P55318 OR11H3P-201ENST00000554547 982 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
FOXA3P55318 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC022884.2-201ENST00000578535 580 ntBASIC4.05□□□□□ -1.76
FOXA3P55318 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.05□□□□□ -1.76
FOXA3P55318 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXA3P55318 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC4.05□□□□□ -1.76
FOXA3P55318 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms