Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 AL031123.3-201ENST00000623345 1837 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
FOXA1P55317 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 OR13C1P-202ENST00000641378 2919 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.19□□□□□ -1.58
FOXA1P55317 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 OR9G4-201ENST00000302957 984 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 RN7SKP81-201ENST00000365603 331 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AC007618.1-201ENST00000366455 732 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.19□□□□□ -1.58
FOXA1P55317 SNORA48.4-201ENST00000391089 134 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 SNORA11.3-201ENST00000408471 128 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 SLC20A1P1-201ENST00000413906 956 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.19□□□□□ -1.58
FOXA1P55317 SRSF1P1-201ENST00000424058 520 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 BX119321.1-201ENST00000428912 797 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AC124944.2-201ENST00000429866 1242 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.19□□□□□ -1.58
FOXA1P55317 HMGN1P2-201ENST00000445197 310 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 NOP56P2-201ENST00000447491 769 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 AC108161.1-201ENST00000461060 402 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.19□□□□□ -1.58
FOXA1P55317 AC138866.2-201ENST00000508650 584 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.19□□□□□ -1.58
FOXA1P55317 AC040958.1-201ENST00000561102 201 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 RBM22P12-201ENST00000567098 1255 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.19□□□□□ -1.58
FOXA1P55317 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.19□□□□□ -1.58
FOXA1P55317 AC009027.1-201ENST00000604510 479 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 AL096712.1-201ENST00000614561 159 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 SNORA11.6-201ENST00000619030 128 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 MIR6839-201ENST00000620425 113 ntBASIC5.19□□□□□ -1.58
FOXA1P55317 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.19□□□□□ -1.58
FOXA1P55317 ACADSB-202ENST00000368869 1599 ntTSL 2 BASIC5.19□□□□□ -1.58
FOXA1P55317 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
FOXA1P55317 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.18□□□□□ -1.58
FOXA1P55317 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 RNA5SP46-201ENST00000362370 120 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
FOXA1P55317 OR4K12P-201ENST00000406538 961 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 COX5BP7-201ENST00000414780 274 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 GSTM5P1-201ENST00000434751 660 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 AL138899.2-201ENST00000439139 499 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.18□□□□□ -1.58
FOXA1P55317 AC109481.1-201ENST00000509173 282 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.18□□□□□ -1.58
FOXA1P55317 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.18□□□□□ -1.58
FOXA1P55317 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.18□□□□□ -1.58
FOXA1P55317 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.18□□□□□ -1.58
FOXA1P55317 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 AL157762.1-201ENST00000619612 415 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 AC132068.1-201ENST00000623805 459 ntBASIC5.18□□□□□ -1.58
FOXA1P55317 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
FOXA1P55317 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
FOXA1P55317 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
FOXA1P55317 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXA1P55317 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
FOXA1P55317 AC015689.2-201ENST00000528172 1738 ntBASIC5.17□□□□□ -1.58
FOXA1P55317 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
FOXA1P55317 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXA1P55317 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms