Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.77□□□□□ -1.49
COL4A4P53420 C1GALT1P3-201ENST00000522049 819 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.77□□□□□ -1.49
COL4A4P53420 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
COL4A4P53420 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
COL4A4P53420 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 AL031320.1-201ENST00000604177 357 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 AC000095.2-202ENST00000637415 154 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.77□□□□□ -1.49
COL4A4P53420 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.77□□□□□ -1.49
COL4A4P53420 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 AL359715.3-201ENST00000569267 2123 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL4A4P53420 RN7SKP145-201ENST00000363291 303 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 RNU1-32P-201ENST00000363937 159 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AC068538.1-201ENST00000376856 336 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL4A4P53420 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL4A4P53420 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.76□□□□□ -1.49
COL4A4P53420 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.76□□□□□ -1.49
COL4A4P53420 RN7SL385P-201ENST00000468873 276 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.76□□□□□ -1.49
COL4A4P53420 MIR5096-201ENST00000583713 70 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AC005084.1-201ENST00000605160 304 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AL627230.1-201ENST00000613077 211 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AL356752.1-201ENST00000615844 593 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AL591926.8-201ENST00000616876 211 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AC010435.1-201ENST00000623353 1177 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AC112694.2-201ENST00000623697 768 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.76□□□□□ -1.49
COL4A4P53420 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.76□□□□□ -1.49
COL4A4P53420 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC5.76□□□□□ -1.49
COL4A4P53420 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 AC012618.3-205ENST00000637896 1496 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 AC011933.2-201ENST00000578539 2790 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.76□□□□□ -1.49
COL4A4P53420 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL4A4P53420 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.76□□□□□ -1.49
COL4A4P53420 UGT2B24P-201ENST00000514441 1597 ntBASIC5.76□□□□□ -1.49
COL4A4P53420 RNA5SP455-201ENST00000365190 119 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 SNORD56.6-201ENST00000384569 71 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AL049693.1-201ENST00000402760 611 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AL158827.1-201ENST00000416300 391 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.75□□□□□ -1.49
COL4A4P53420 NDUFA12P1-201ENST00000455914 406 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.75□□□□□ -1.49
COL4A4P53420 AC091912.1-201ENST00000511351 248 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.75□□□□□ -1.49
COL4A4P53420 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.75□□□□□ -1.49
COL4A4P53420 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.75□□□□□ -1.49
COL4A4P53420 AC020910.2-201ENST00000603635 610 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AL356608.1-201ENST00000610034 820 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AC083809.1-201ENST00000615051 472 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 AC005618.4-201ENST00000625053 554 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 AC100757.1-201ENST00000616872 1835 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
COL4A4P53420 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 MT-RNR2-201ENST00000387347 1559 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.75□□□□□ -1.49
COL4A4P53420 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL4A4P53420 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL4A4P53420 RN7SKP6-201ENST00000364795 319 ntBASIC5.75□□□□□ -1.49
COL4A4P53420 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL4A4P53420 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.75□□□□□ -1.49
COL4A4P53420 CYP4F29P-201ENST00000420685 446 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms