Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC6.65□□□□□ -1.35
COL5A3P25940 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL5A3P25940 AC068538.1-201ENST00000376856 336 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 RNU1-74P-201ENST00000384108 171 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
COL5A3P25940 RNA5SP113-201ENST00000410486 84 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.64□□□□□ -1.35
COL5A3P25940 TPT1P13-201ENST00000449760 499 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 PRELID3BP5-201ENST00000508612 460 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 C1GALT1P3-201ENST00000522049 819 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.64□□□□□ -1.35
COL5A3P25940 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.64□□□□□ -1.35
COL5A3P25940 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.64□□□□□ -1.35
COL5A3P25940 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.64□□□□□ -1.35
COL5A3P25940 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
COL5A3P25940 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.64□□□□□ -1.35
COL5A3P25940 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 AC104162.1-201ENST00000430831 2382 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.64□□□□□ -1.35
COL5A3P25940 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
COL5A3P25940 RNU6-398P-201ENST00000384143 109 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 RPL11P3-201ENST00000395256 523 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 PPIAP9-201ENST00000403866 498 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.64□□□□□ -1.35
COL5A3P25940 AL606490.8-201ENST00000441624 319 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.64□□□□□ -1.35
COL5A3P25940 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.64□□□□□ -1.35
COL5A3P25940 AC098935.2-201ENST00000604222 466 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 AL391358.1-201ENST00000605342 190 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.64□□□□□ -1.35
COL5A3P25940 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.64□□□□□ -1.35
COL5A3P25940 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL5A3P25940 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
COL5A3P25940 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC6.64□□□□□ -1.35
COL5A3P25940 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 AC079097.1-201ENST00000512187 1399 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC6.63□□□□□ -1.35
COL5A3P25940 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.63□□□□□ -1.35
COL5A3P25940 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.63□□□□□ -1.35
COL5A3P25940 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.63□□□□□ -1.35
COL5A3P25940 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 AC079741.1-201ENST00000321498 212 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
COL5A3P25940 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.63□□□□□ -1.35
COL5A3P25940 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.63□□□□□ -1.35
COL5A3P25940 OR7E125P-201ENST00000443450 846 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.63□□□□□ -1.35
COL5A3P25940 AC093267.1-201ENST00000489176 961 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 GAPDHP56-201ENST00000506031 988 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.63□□□□□ -1.35
COL5A3P25940 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.63□□□□□ -1.35
COL5A3P25940 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.63□□□□□ -1.35
COL5A3P25940 AC027667.1-201ENST00000545814 304 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 MIR3667-201ENST00000581025 74 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 UGT2B24P-201ENST00000514441 1597 ntBASIC6.63□□□□□ -1.35
COL5A3P25940 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
COL5A3P25940 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.63□□□□□ -1.35
COL5A3P25940 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL5A3P25940 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.63□□□□□ -1.35
COL5A3P25940 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 GJA6P-201ENST00000415117 1042 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.62□□□□□ -1.35
COL5A3P25940 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.62□□□□□ -1.35
COL5A3P25940 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.62□□□□□ -1.35
COL5A3P25940 MIR6780A-201ENST00000615089 68 ntBASIC6.62□□□□□ -1.35
COL5A3P25940 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL5A3P25940 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL5A3P25940 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL5A3P25940 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 174.7 ms