Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 HSPA8P14-201ENST00000552265 1805 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 RNA5SP131-201ENST00000365452 119 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 SUGT1P2-201ENST00000379452 992 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 HMGN2P27-201ENST00000427352 270 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 AL512637.1-201ENST00000439523 1231 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 AC104339.1-201ENST00000465478 348 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 RPS23P6-201ENST00000466136 431 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 MORF4L2P1-201ENST00000503761 858 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 AC114781.3-201ENST00000512083 142 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 SNORA70.20-201ENST00000516848 126 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 OOSP1P2-201ENST00000579644 351 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 AC244107.2-201ENST00000611773 76 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 AC024884.1-201ENST00000620583 399 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 AL683826.1-201ENST00000624104 627 ntBASIC5.86□□□□□ -1.47
CCDC42Q96M95 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
CCDC42Q96M95 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC42Q96M95 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AL603750.1-201ENST00000624216 1717 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC079298.1-201ENST00000625026 1619 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 Z95331.1-201ENST00000623075 23112 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 RNU1-19P-201ENST00000363306 165 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 RNA5SP431-201ENST00000410312 120 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AL450023.1-201ENST00000450868 751 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AP000547.1-201ENST00000454360 617 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 IMPA1P1-201ENST00000510718 842 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC109464.1-201ENST00000511091 819 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC006512.2-201ENST00000543250 486 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC026826.3-201ENST00000561747 158 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 MTCYBP13-201ENST00000578634 1093 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC015802.2-201ENST00000589690 189 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AP000769.2-201ENST00000602344 396 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AL365181.4-201ENST00000609800 547 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 MIR6806-201ENST00000622141 64 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
CCDC42Q96M95 AL078595.2-201ENST00000605309 1780 ntBASIC5.85□□□□□ -1.47
CCDC42Q96M95 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC42Q96M95 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 SRRM1P3-201ENST00000426911 2678 ntBASIC5.84□□□□□ -1.47
CCDC42Q96M95 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 ADAM5-202ENST00000399789 1942 ntBASIC5.84□□□□□ -1.47
CCDC42Q96M95 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 OR9K1P-201ENST00000326513 941 ntBASIC5.84□□□□□ -1.47
CCDC42Q96M95 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 RN7SKP6-201ENST00000364795 319 ntBASIC5.84□□□□□ -1.47
CCDC42Q96M95 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC42Q96M95 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 AKR1B10P1-201ENST00000425765 942 ntBASIC5.84□□□□□ -1.47
CCDC42Q96M95 AC127526.2-201ENST00000426436 775 ntBASIC5.84□□□□□ -1.47
CCDC42Q96M95 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC42Q96M95 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms