Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 BRD9P1-201ENST00000529855 560 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 MIR5095-201ENST00000578844 88 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC130304.1-201ENST00000622942 2385 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RPL23AP60-201ENST00000450011 454 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC093267.1-201ENST00000489176 961 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 SNX18P3-202ENST00000565670 1750 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC003973.3-201ENST00000624863 2822 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RNA5SP339-201ENST00000390987 122 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RNU6ATAC7P-201ENST00000408111 127 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RNA5SP156-201ENST00000410250 110 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 CYCSP12-201ENST00000437729 300 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 HMGB1P44-201ENST00000508597 572 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC109481.1-201ENST00000509173 282 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RNA5SP373-201ENST00000517271 95 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 OR6M2P-201ENST00000529831 871 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 OR8G3P-201ENST00000533406 921 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 GARSP1-201ENST00000570895 719 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC104785.1-201ENST00000603220 588 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 uc_338.26-201ENST00000612659 160 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AP000550.3-201ENST00000637734 379 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC138907.8-201ENST00000623981 2256 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 MIR541-201ENST00000401360 84 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AL109941.1-201ENST00000401925 229 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC012519.1-201ENST00000424588 610 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC005297.1-201ENST00000444765 862 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RPL38P3-201ENST00000484463 213 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 RN7SL30P-201ENST00000488416 306 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 AC007159.1-201ENST00000566529 4706 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 PCAT14-202ENST00000627127 3935 ntBASIC1.71□□□□□ -2.14
SYNE1Q8NF91 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SYNE1Q8NF91 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC004817.4-201ENST00000602396 3625 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 RNU1-43P-201ENST00000365052 165 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL023284.3-201ENST00000407767 334 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 DSTNP5-201ENST00000427921 523 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC096741.1-201ENST00000472250 846 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 OR5AZ1P-201ENST00000527448 943 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC060766.1-201ENST00000590824 627 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC145423.1-201ENST00000605712 336 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms