Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.9□□□□□ -1.63
CDX1P47902 RPL12P30-201ENST00000488389 499 ntBASIC4.9□□□□□ -1.63
CDX1P47902 RPL37P23-201ENST00000492641 294 ntBASIC4.9□□□□□ -1.63
CDX1P47902 SUMO1P1-201ENST00000497904 306 ntBASIC4.9□□□□□ -1.63
CDX1P47902 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.9□□□□□ -1.63
CDX1P47902 AC036111.2-201ENST00000533247 901 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AC006512.2-201ENST00000543250 486 ntBASIC4.9□□□□□ -1.63
CDX1P47902 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 NOP56P3-201ENST00000549457 385 ntBASIC4.9□□□□□ -1.63
CDX1P47902 LSM3P2-201ENST00000551246 273 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.9□□□□□ -1.63
CDX1P47902 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC4.9□□□□□ -1.63
CDX1P47902 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.9□□□□□ -1.63
CDX1P47902 RN7SL475P-201ENST00000583379 298 ntBASIC4.9□□□□□ -1.63
CDX1P47902 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC4.9□□□□□ -1.63
CDX1P47902 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.9□□□□□ -1.63
CDX1P47902 RPSAP75-201ENST00000605848 301 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AC034236.3-201ENST00000605999 461 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC4.9□□□□□ -1.63
CDX1P47902 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AC024884.1-201ENST00000620583 399 ntBASIC4.9□□□□□ -1.63
CDX1P47902 MIR7159-201ENST00000620587 66 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC4.9□□□□□ -1.63
CDX1P47902 RPL23AP61-201ENST00000623642 466 ntBASIC4.9□□□□□ -1.63
CDX1P47902 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC4.9□□□□□ -1.63
CDX1P47902 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 VPS35P1-201ENST00000563400 1518 ntBASIC4.9□□□□□ -1.63
CDX1P47902 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
CDX1P47902 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC4.9□□□□□ -1.63
CDX1P47902 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
CDX1P47902 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
CDX1P47902 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CDX1P47902 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.89□□□□□ -1.63
CDX1P47902 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 AC092692.1-201ENST00000623625 2595 ntBASIC4.89□□□□□ -1.63
CDX1P47902 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 GVINP1-202ENST00000531871 7271 ntBASIC4.89□□□□□ -1.63
CDX1P47902 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC4.89□□□□□ -1.63
CDX1P47902 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.89□□□□□ -1.63
CDX1P47902 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 RNA5SP478-201ENST00000364657 115 ntBASIC4.89□□□□□ -1.63
CDX1P47902 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CDX1P47902 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CDX1P47902 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 RN7SKP151-201ENST00000410230 316 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AL354707.3-201ENST00000427308 331 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AC073410.1-201ENST00000435125 589 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 MED28P3-201ENST00000444288 531 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AC009963.3-201ENST00000458090 486 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AC037198.2-201ENST00000478845 733 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AC093663.2-201ENST00000484625 313 ntBASIC4.89□□□□□ -1.63
CDX1P47902 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC4.89□□□□□ -1.63
CDX1P47902 HMGN1P17-201ENST00000513734 295 ntBASIC4.89□□□□□ -1.63
CDX1P47902 RNA5SP206-201ENST00000516703 121 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC4.89□□□□□ -1.63
CDX1P47902 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC4.89□□□□□ -1.63
CDX1P47902 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AP000859.1-201ENST00000525536 307 ntBASIC4.89□□□□□ -1.63
CDX1P47902 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC4.89□□□□□ -1.63
CDX1P47902 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC4.89□□□□□ -1.63
CDX1P47902 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 AC009120.3-201ENST00000563335 499 ntBASIC4.89□□□□□ -1.63
CDX1P47902 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.89□□□□□ -1.63
CDX1P47902 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 AC006272.2-201ENST00000594725 163 ntBASIC4.89□□□□□ -1.63
CDX1P47902 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CDX1P47902 AC124916.2-201ENST00000604416 224 ntBASIC4.89□□□□□ -1.63
CDX1P47902 AC242628.1-201ENST00000606810 391 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms