Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.67□□□□□ -1.34
COL5A3P25940 RPL36AP15-201ENST00000444514 266 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 TPT1P12-201ENST00000448968 492 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 RN7SL205P-201ENST00000490174 284 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 GAPDHP62-201ENST00000515313 990 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 GCSHP4-201ENST00000538792 439 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 RN7SL52P-201ENST00000584271 284 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 RN7SL722P-201ENST00000617780 284 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 RN7SL565P-201ENST00000618246 284 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 NEK3-211ENST00000629912 141 ntTSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.67□□□□□ -1.34
COL5A3P25940 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.67□□□□□ -1.34
COL5A3P25940 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 RNA5SP90-201ENST00000364801 99 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 RN7SKP100-201ENST00000411258 284 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.67□□□□□ -1.34
COL5A3P25940 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.67□□□□□ -1.34
COL5A3P25940 AC112498.1-201ENST00000444401 332 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 AL354714.3-201ENST00000447284 493 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.67□□□□□ -1.34
COL5A3P25940 AC091912.1-201ENST00000511351 248 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.67□□□□□ -1.34
COL5A3P25940 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 OR7E128P-201ENST00000532736 1024 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 NPM1P42-201ENST00000560329 862 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 AC060780.2-201ENST00000589047 198 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 AC073869.8-201ENST00000641806 335 ntBASIC6.67□□□□□ -1.34
COL5A3P25940 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
COL5A3P25940 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.67□□□□□ -1.34
COL5A3P25940 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL5A3P25940 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL5A3P25940 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 RNU1-32P-201ENST00000363937 159 ntBASIC6.66□□□□□ -1.34
COL5A3P25940 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.66□□□□□ -1.34
COL5A3P25940 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.66□□□□□ -1.34
COL5A3P25940 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.66□□□□□ -1.34
COL5A3P25940 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.66□□□□□ -1.34
COL5A3P25940 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.66□□□□□ -1.34
COL5A3P25940 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.66□□□□□ -1.34
COL5A3P25940 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 AL158152.1-201ENST00000602652 1435 ntBASIC6.66□□□□□ -1.34
COL5A3P25940 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.66□□□□□ -1.34
COL5A3P25940 AC005225.5-201ENST00000623547 2225 ntBASIC6.66□□□□□ -1.34
COL5A3P25940 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
COL5A3P25940 NLRP3P1-201ENST00000622303 1785 ntBASIC6.66□□□□□ -1.34
COL5A3P25940 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.66□□□□□ -1.34
COL5A3P25940 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL5A3P25940 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC6.66□□□□□ -1.34
COL5A3P25940 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL5A3P25940 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL5A3P25940 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.65□□□□□ -1.34
COL5A3P25940 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC6.65□□□□□ -1.34
COL5A3P25940 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
COL5A3P25940 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL5A3P25940 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.65□□□□□ -1.34
COL5A3P25940 OR2AM1P-201ENST00000422137 422 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.65□□□□□ -1.34
COL5A3P25940 RPL5P25-201ENST00000441148 775 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 AC079168.1-201ENST00000458741 345 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 RN7SL814P-201ENST00000487715 300 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 RPL23AP72-201ENST00000492447 435 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.65□□□□□ -1.34
COL5A3P25940 AC006427.1-201ENST00000514359 712 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.65□□□□□ -1.34
COL5A3P25940 OR5AN2P-201ENST00000534535 896 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 AC108738.1-201ENST00000603703 237 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 AP003400.3-201ENST00000624904 346 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.65□□□□□ -1.34
COL5A3P25940 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL5A3P25940 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL5A3P25940 BX284613.1-201ENST00000452221 1641 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL5A3P25940 BRD7P6-201ENST00000431406 1860 ntBASIC6.65□□□□□ -1.34
COL5A3P25940 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.65□□□□□ -1.35
COL5A3P25940 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.65□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms