Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 IGBP1P4-201ENST00000503202 879 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 BCAS2P1-201ENST00000528022 632 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 AC024405.1-201ENST00000532521 1042 ntBASIC5.22□□□□□ -1.57
SDC1P18827 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 IGBP1P1-201ENST00000554337 1009 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.22□□□□□ -1.57
SDC1P18827 AC234775.3-201ENST00000564612 656 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 RN7SL290P-201ENST00000578661 300 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AP001496.3-201ENST00000580230 913 ntBASIC5.22□□□□□ -1.57
SDC1P18827 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SDC1P18827 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SDC1P18827 AC107993.1-201ENST00000591343 684 ntBASIC5.22□□□□□ -1.57
SDC1P18827 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 AL138895.2-201ENST00000603019 178 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AL022394.1-201ENST00000606979 292 ntBASIC5.22□□□□□ -1.57
SDC1P18827 MIR6071-201ENST00000616741 78 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 AC114786.1-201ENST00000512892 1415 ntBASIC5.22□□□□□ -1.57
SDC1P18827 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.57
SDC1P18827 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
SDC1P18827 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SDC1P18827 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
SDC1P18827 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SDC1P18827 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SDC1P18827 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.21□□□□□ -1.58
SDC1P18827 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
SDC1P18827 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SDC1P18827 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
SDC1P18827 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SDC1P18827 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.21□□□□□ -1.58
SDC1P18827 MIR551A-201ENST00000385042 96 ntBASIC5.21□□□□□ -1.58
SDC1P18827 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SDC1P18827 RNA5SP241-201ENST00000391326 114 ntBASIC5.21□□□□□ -1.58
SDC1P18827 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 LYPLA1P3-201ENST00000402650 695 ntBASIC5.21□□□□□ -1.58
SDC1P18827 HYALP1-201ENST00000417674 1279 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.21□□□□□ -1.58
SDC1P18827 REREP1Y-201ENST00000422655 198 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AL662874.1-201ENST00000426065 230 ntBASIC5.21□□□□□ -1.58
SDC1P18827 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SDC1P18827 REREP2Y-201ENST00000439103 200 ntBASIC5.21□□□□□ -1.58
SDC1P18827 RPL5P25-201ENST00000441148 775 ntBASIC5.21□□□□□ -1.58
SDC1P18827 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.21□□□□□ -1.58
SDC1P18827 AL450023.1-201ENST00000450868 751 ntBASIC5.21□□□□□ -1.58
SDC1P18827 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.21□□□□□ -1.58
SDC1P18827 HMGN1P9-201ENST00000515212 298 ntBASIC5.21□□□□□ -1.58
SDC1P18827 SNORA43.3-201ENST00000517240 103 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 OR8G3P-201ENST00000533406 921 ntBASIC5.21□□□□□ -1.58
SDC1P18827 TOMM20P1-201ENST00000534518 427 ntBASIC5.21□□□□□ -1.58
SDC1P18827 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.21□□□□□ -1.58
SDC1P18827 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
SDC1P18827 AC107958.1-201ENST00000556576 290 ntBASIC5.21□□□□□ -1.58
SDC1P18827 HMGN2P47-201ENST00000559378 272 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 MRPS21P7-201ENST00000566937 238 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 AC134669.1-201ENST00000581275 672 ntBASIC5.21□□□□□ -1.58
SDC1P18827 MIR4271-201ENST00000582451 67 ntBASIC5.21□□□□□ -1.58
SDC1P18827 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.21□□□□□ -1.58
SDC1P18827 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.21□□□□□ -1.58
SDC1P18827 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.21□□□□□ -1.58
SDC1P18827 AC087468.1-201ENST00000604365 630 ntBASIC5.21□□□□□ -1.58
SDC1P18827 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.21□□□□□ -1.58
SDC1P18827 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
SDC1P18827 AP003400.2-201ENST00000624036 666 ntBASIC5.21□□□□□ -1.58
SDC1P18827 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SDC1P18827 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
SDC1P18827 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.21□□□□□ -1.58
SDC1P18827 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms