Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC7.33□□□□□ -1.24
HMGB1P09429 AL133243.2-201ENST00000610331 1621 ntBASIC7.33□□□□□ -1.24
HMGB1P09429 PHKBP1-201ENST00000450951 1951 ntBASIC7.33□□□□□ -1.24
HMGB1P09429 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC7.33□□□□□ -1.24
HMGB1P09429 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.33□□□□□ -1.24
HMGB1P09429 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC7.33□□□□□ -1.24
HMGB1P09429 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
HMGB1P09429 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 AL355377.1-201ENST00000621125 1653 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC7.32□□□□□ -1.24
HMGB1P09429 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
HMGB1P09429 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 RN7SKP144-201ENST00000411108 279 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 RPL12P34-201ENST00000424532 479 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC7.32□□□□□ -1.24
HMGB1P09429 RPL17P35-201ENST00000432217 549 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC7.32□□□□□ -1.24
HMGB1P09429 FTH1P16-201ENST00000435241 552 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7.32□□□□□ -1.24
HMGB1P09429 RPS27P5-201ENST00000444247 244 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC7.32□□□□□ -1.24
HMGB1P09429 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 RPL23AP60-201ENST00000450011 454 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 RAB28P2-201ENST00000454299 641 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC7.32□□□□□ -1.24
HMGB1P09429 AC112187.1-201ENST00000455837 479 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC073594.1-201ENST00000462065 364 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.32□□□□□ -1.24
HMGB1P09429 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC7.32□□□□□ -1.24
HMGB1P09429 AC008429.4-201ENST00000521201 182 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC7.32□□□□□ -1.24
HMGB1P09429 NPIPB14P-203ENST00000532298 987 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC092865.1-201ENST00000544395 1023 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC007494.1-201ENST00000562293 760 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC079148.1-201ENST00000565944 819 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 AC020916.2-201ENST00000591242 360 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AP001823.1-201ENST00000604056 1003 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 AC090948.2-201ENST00000607363 564 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC245389.2-201ENST00000616023 576 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC242843.1-201ENST00000618702 573 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AL137067.2-201ENST00000621202 131 ntBASIC7.32□□□□□ -1.24
HMGB1P09429 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
HMGB1P09429 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HMGB1P09429 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC7.32□□□□□ -1.24
HMGB1P09429 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7.32□□□□□ -1.24
HMGB1P09429 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC7.32□□□□□ -1.24
HMGB1P09429 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
HMGB1P09429 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.31□□□□□ -1.24
HMGB1P09429 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
HMGB1P09429 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.31□□□□□ -1.24
HMGB1P09429 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.31□□□□□ -1.24
HMGB1P09429 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
HMGB1P09429 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC7.31□□□□□ -1.24
HMGB1P09429 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 RN7SKP146-201ENST00000410242 334 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AL133482.1-201ENST00000415988 498 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 RPL23AP18-201ENST00000416139 468 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC7.31□□□□□ -1.24
HMGB1P09429 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 AC013403.1-201ENST00000436954 263 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC007383.1-201ENST00000445875 636 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC092685.1-201ENST00000447960 1243 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 TPMTP4-201ENST00000450749 678 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC110749.1-201ENST00000462007 357 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 HMGN1P16-201ENST00000508308 283 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 Y_RNA.710-201ENST00000516975 110 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC7.31□□□□□ -1.24
HMGB1P09429 OR56A7P-201ENST00000524865 941 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC7.31□□□□□ -1.24
HMGB1P09429 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
HMGB1P09429 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC7.31□□□□□ -1.24
HMGB1P09429 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC7.31□□□□□ -1.24
HMGB1P09429 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC7.31□□□□□ -1.24
HMGB1P09429 AC090826.1-203ENST00000569235 490 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC7.31□□□□□ -1.24
HMGB1P09429 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC7.31□□□□□ -1.24
HMGB1P09429 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC7.31□□□□□ -1.24
HMGB1P09429 VN1R84P-201ENST00000593697 235 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC7.31□□□□□ -1.24
HMGB1P09429 AC008555.7-201ENST00000605008 583 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AP001033.2-201ENST00000609701 1003 ntBASIC7.31□□□□□ -1.24
HMGB1P09429 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms