Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 NDUFA5P2-201ENST00000519723 344 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 YWHABP2-201ENST00000540201 713 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXA3O43365 GNG2-203ENST00000553432 577 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXA3O43365 BLZF2P-201ENST00000553776 1130 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 BNIP3P26-201ENST00000600827 554 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC073544.2-201ENST00000601155 540 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AP000238.1-201ENST00000608759 426 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC121761.2-201ENST00000617300 689 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 MIR6823-201ENST00000622118 61 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC005514.1-201ENST00000623521 208 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC006927.3-201ENST00000638789 384 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 AP005901.5-201ENST00000545779 1796 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC010132.4-201ENST00000569883 1368 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 MTND4P34-201ENST00000572715 1371 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
HOXA3O43365 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 Y_RNA.553-201ENST00000384670 102 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 MIR621-201ENST00000384919 96 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HOXA3O43365 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA3O43365 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA3O43365 AC245060.4-201ENST00000413293 1121 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 NPM1P11-201ENST00000417106 855 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 RPL36P18-201ENST00000419316 318 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 RPL17P17-201ENST00000419491 557 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 RPL7AP51-201ENST00000422016 760 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 C8orf59P1-201ENST00000429930 303 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 DEFA9P-201ENST00000433042 285 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 RPL23AP76-201ENST00000441860 458 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA3O43365 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA3O43365 RPS7P10-201ENST00000464254 603 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 GAPDHP36-201ENST00000480688 918 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA3O43365 RPS6P4-201ENST00000494693 758 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA3O43365 AC005178.1-201ENST00000508392 440 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA3O43365 AC104108.1-201ENST00000509930 412 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 NPM1P21-201ENST00000513394 762 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA3O43365 RN7SKP98-201ENST00000517070 156 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 IGHV3-63-201ENST00000518422 341 ntBASIC5.53□□□□□ -1.52
HOXA3O43365 AC023632.1-201ENST00000518463 375 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms