Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 TMSB4XP4-201ENST00000323496 618 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 RNA5SP394-201ENST00000364216 119 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 RNA5SP30-201ENST00000365552 115 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 SNORA17A-201ENST00000391185 133 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC087752.1-201ENST00000391360 558 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC092642.1-201ENST00000392417 425 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 HMGB1P20-201ENST00000402555 677 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 RN7SKP17-201ENST00000411242 351 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC096921.1-201ENST00000411661 375 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 CASKP1-201ENST00000412870 582 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC096644.3-201ENST00000416788 338 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC090058.1-201ENST00000498788 435 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 HNRNPRP2-201ENST00000528421 743 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC011270.1-201ENST00000558606 583 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 SNORA17.5-201ENST00000630429 132 ntBASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 PWAR1-201ENST00000624188 2414 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 OR13C1P-202ENST00000641378 2919 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 RNA5SP326-201ENST00000363209 110 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AL356968.2-201ENST00000412769 1257 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 RPS6P23-201ENST00000413224 722 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 DPPA2P2-201ENST00000418220 897 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC012123.2-201ENST00000485809 248 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 DUTP7-201ENST00000507982 486 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 CCNHP1-201ENST00000513311 678 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 GAPDHP62-201ENST00000515313 990 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 IGLV3-24-201ENST00000517477 197 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 MRPS16P1-201ENST00000523462 412 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC012146.2-201ENST00000576545 416 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 AC104964.3-201ENST00000606115 2860 ntBASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.36□□□□□ -1.55
ATG4BQ9Y4P1 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms