Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC245389.1-201ENST00000605141 529 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AC016876.3-201ENST00000610459 426 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AC069499.2-201ENST00000610665 382 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AC018926.2-201ENST00000611214 498 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AC131159.2-201ENST00000613236 702 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AL133173.2-201ENST00000614270 90 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AC141273.2-201ENST00000618989 130 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 MKKS-204ENST00000639674 192 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 ADA2-204ENST00000399839 3986 ntAPPRIS P3 TSL 5 BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AL512604.2-201ENST00000426946 1314 ntTSL 5 BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 AC006058.1-201ENST00000568686 5067 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 Z97832.2-201ENST00000605896 4261 ntBASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 CPB2-AS1-204ENST00000606991 3218 ntTSL 2 BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 TBCCD1-201ENST00000338733 2441 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 ZNF544-201ENST00000269829 3547 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 GPBP1L1-201ENST00000290795 3599 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 CDY1B-202ENST00000382407 2227 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 ANXA2-202ENST00000396024 1676 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
VPS9D1Q9Y2B5 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 PRSS51-203ENST00000636217 2255 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 SLC8A1-203ENST00000403092 3178 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 ERGIC1-201ENST00000326654 3952 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 FAM13C-215ENST00000614220 3388 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AF287957.1-201ENST00000607368 1595 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 C2CD5-218ENST00000545552 3471 ntTSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 CRYGA-201ENST00000304502 609 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 RNA5SP78-201ENST00000364622 118 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 IGLV3-12-201ENST00000390313 356 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL589647.1-201ENST00000402485 466 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL359634.1-202ENST00000404721 284 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 LINC01644-201ENST00000405369 984 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 VN2R10P-201ENST00000411871 853 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 RAC1P6-201ENST00000423911 575 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL606753.1-201ENST00000427435 87 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC093151.1-201ENST00000427711 313 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 RPL26P34-201ENST00000431005 451 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 PSMD8P1-201ENST00000436275 769 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AP000474.1-201ENST00000441465 680 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL031727.1-201ENST00000457263 455 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 RN7SL856P-201ENST00000461754 298 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC092324.1-201ENST00000468671 324 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC128713.1-201ENST00000471495 306 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 RPL19P13-201ENST00000483119 583 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 RPL36P16-201ENST00000496996 306 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 PLA2G12AP1-201ENST00000497678 568 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC114964.1-201ENST00000502306 1111 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 GZMAP1-201ENST00000503054 631 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC010350.1-201ENST00000504908 231 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC106799.2-201ENST00000507435 721 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC079795.1-201ENST00000508847 358 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 MTCYBP40-201ENST00000509390 1135 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 TTC39CP1-201ENST00000512513 755 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 Vault.3-201ENST00000516676 95 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 IGKV2D-14-201ENST00000522473 355 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AP001767.2-201ENST00000527291 382 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC024224.1-201ENST00000538284 609 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 FLVCR2-202ENST00000539311 1221 ntTSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL389895.1-201ENST00000554127 252 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 OTX2-204ENST00000554788 835 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 APOOP5-202ENST00000564761 566 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 TTC39A-AS1-202ENST00000568425 554 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AP000915.2-201ENST00000582120 454 ntTSL 3 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC139085.1-201ENST00000582716 182 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC110743.1-201ENST00000584870 478 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AC011444.4-201ENST00000586415 418 ntBASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC8.2□□□□□ -1.1
VPS9D1Q9Y2B5 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms