Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CCDC28BQ9BUN5 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC083843.2-201ENST00000568248 6253 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC021242.1-201ENST00000507315 2035 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 PWAR1-201ENST00000624188 2414 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RN7SKP292-201ENST00000365522 317 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RNA5SP296-201ENST00000410523 111 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 HSPD1P12-201ENST00000429127 1069 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC016772.1-201ENST00000444170 1261 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC097463.1-201ENST00000447288 481 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 MTND4LP12-201ENST00000448237 295 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RN7SL254P-201ENST00000460609 284 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RN7SL57P-201ENST00000493687 290 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC098799.1-201ENST00000504752 800 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AL158068.1-201ENST00000506116 616 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC022784.5-201ENST00000522241 437 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AC107993.1-201ENST00000591343 684 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AP003072.5-201ENST00000623872 773 ntBASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC28BQ9BUN5 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 STX3-208ENST00000641815 3236 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 Z83820.1-201ENST00000456978 1499 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC083843.3-201ENST00000623679 2186 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 GAPDHP24-201ENST00000328713 983 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AL159987.1-201ENST00000347911 293 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 SNORD56.6-201ENST00000384569 71 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RPL21P67-201ENST00000402896 478 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RNA5SP487-201ENST00000410186 122 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RN7SKP146-201ENST00000410242 334 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 OR6C71P-201ENST00000432580 913 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 LINC00328-2P-201ENST00000436585 219 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC090804.1-201ENST00000448870 490 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 OR11I1P-201ENST00000486033 954 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 DUTP7-201ENST00000507982 486 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RNU6-1334P-201ENST00000516032 105 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC006530.1-201ENST00000555980 571 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RPA2P1-201ENST00000556557 721 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 MT1CP-201ENST00000567054 174 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 RN7SL66P-201ENST00000582099 264 ntBASIC5.41□□□□□ -1.54
CCDC28BQ9BUN5 AC090236.2-201ENST00000587933 1101 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms