Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC005005.4-201ENST00000623789 16698 ntBASIC5.01□□□□□ -1.61
NKX3-1Q99801 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 COX6B1P3-201ENST00000312310 260 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 RNA5SP326-201ENST00000363209 110 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 AL096711.1-201ENST00000404780 554 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC098592.2-201ENST00000413158 265 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 RPL35AP3-201ENST00000414680 288 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC130360.1-201ENST00000425489 1117 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5□□□□□ -1.61
NKX3-1Q99801 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 MRPS33P4-201ENST00000434892 317 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 GAPDHP48-201ENST00000436626 961 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC023141.8-201ENST00000442554 208 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 MED28P3-201ENST00000444288 531 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 AL445466.1-201ENST00000448432 357 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC090602.1-201ENST00000469695 252 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 OR9N1P-201ENST00000491296 333 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 NPM1P21-201ENST00000513394 762 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC111000.6-201ENST00000514471 709 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5□□□□□ -1.61
NKX3-1Q99801 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 FAU-203ENST00000525297 355 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC130365.2-201ENST00000525882 1201 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 MIR4701-201ENST00000583094 63 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5□□□□□ -1.61
NKX3-1Q99801 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 AC018809.2-201ENST00000602436 3823 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 Six3os1_2.1-201ENST00000616963 217 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL445670.1-201ENST00000618889 801 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 MTND4P21-201ENST00000453886 1357 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AL354854.1-201ENST00000455940 1363 ntBASIC5□□□□□ -1.61
NKX3-1Q99801 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5□□□□□ -1.61
NKX3-1Q99801 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
NKX3-1Q99801 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5□□□□□ -1.61
NKX3-1Q99801 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AP005432.1-201ENST00000580891 3485 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL158152.1-201ENST00000602652 1435 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 LYARP1-201ENST00000436977 1501 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC020633.1-201ENST00000468439 2247 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 DDX18P6-201ENST00000450119 1997 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 SELENOWP1-201ENST00000322792 252 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC004386.1-201ENST00000393214 761 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 RPL11P3-201ENST00000395256 523 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC096921.1-201ENST00000411661 375 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL512504.1-201ENST00000415494 778 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 211.2 ms