Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC119674.1-202ENST00000641333 1860 ntBASIC5.06□□□□□ -1.6
PDLIM3Q53GG5 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
PDLIM3Q53GG5 AC092724.1-201ENST00000624623 3397 ntBASIC5.06□□□□□ -1.6
PDLIM3Q53GG5 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM3Q53GG5 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PDLIM3Q53GG5 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC087565.3-202ENST00000642085 1603 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC093775.1-201ENST00000624154 1868 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 RNU1-19P-201ENST00000363306 165 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 SNORA27.3-201ENST00000364937 134 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AL096800.1-201ENST00000405326 893 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 OR2AT2P-201ENST00000413438 905 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AL513325.1-201ENST00000417716 1034 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AL390879.2-203ENST00000426943 1121 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC083862.1-201ENST00000427378 1242 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC097463.1-201ENST00000447288 481 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 SNRPCP3-201ENST00000474888 476 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 OR8K2P-201ENST00000524645 927 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 HNRNPCP1-201ENST00000556181 766 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 OR51C1P-201ENST00000608504 942 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC116651.1-201ENST00000609724 556 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC004477.3-201ENST00000614061 590 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 MIR7159-201ENST00000620587 66 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AC027228.2-201ENST00000567141 2154 ntBASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.05□□□□□ -1.6
PDLIM3Q53GG5 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MTND4P21-201ENST00000453886 1357 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 SNORD1C-201ENST00000363315 78 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MIR421-201ENST00000365696 85 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 SUGT1P2-201ENST00000379452 992 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 U3.52-201ENST00000384034 216 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MIR585-201ENST00000384887 94 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MIR143-201ENST00000385300 106 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 RN7SKP281-201ENST00000410472 352 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 AL512504.1-201ENST00000415494 778 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 AL445528.1-201ENST00000426330 420 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MTCO1P51-201ENST00000427672 1060 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 MRPS33P4-201ENST00000434892 317 ntBASIC5.04□□□□□ -1.6
PDLIM3Q53GG5 GAPDHP58-201ENST00000438477 1006 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms