Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CBX1P3-201ENST00000413296 527 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 TNPO1P1-201ENST00000423641 1138 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 MRPS21P2-201ENST00000424704 264 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AL590762.4-201ENST00000425885 253 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 EEF1B2P6-201ENST00000445713 673 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC105918.1-201ENST00000474399 838 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 OR2AO1P-201ENST00000476497 403 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC090058.1-201ENST00000498788 435 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC108157.1-201ENST00000510511 539 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC090958.1-201ENST00000511122 351 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 GAPDHP71-201ENST00000511530 1003 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 HAUS8P1-201ENST00000549005 542 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC040174.2-201ENST00000602701 465 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 AC022106.1-201ENST00000612834 766 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 RN7SKP186-201ENST00000365371 303 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MIR550A3-201ENST00000390735 95 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL356968.2-201ENST00000412769 1257 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 UBE2V1P14-201ENST00000415815 558 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 RPS7P14-201ENST00000426405 583 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL390879.2-203ENST00000426943 1121 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MTCO1P45-201ENST00000431457 267 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL590399.4-201ENST00000436561 601 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC005532.2-201ENST00000467154 373 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL122020.1-201ENST00000472287 459 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 RN7SL808P-201ENST00000496066 299 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC025470.1-201ENST00000510053 2032 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC147055.3-201ENST00000510547 851 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 SETP12-201ENST00000514068 805 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC007494.1-201ENST00000562293 760 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MTND4LP25-201ENST00000570218 163 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 TMF1P1-201ENST00000576058 373 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AL445222.1-201ENST00000607259 628 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 AC092574.1-201ENST00000609771 420 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 MIR7159-201ENST00000620587 66 ntBASIC5.78□□□□□ -1.48
COL28A1Q2UY09 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.78□□□□□ -1.48
COL28A1Q2UY09 PABPC1P6-201ENST00000445594 1829 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms