Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CYCSP41-201ENST00000616920 296 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AC092140.2-201ENST00000618027 521 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 AC013470.4-201ENST00000619978 986 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AL035661.1-201ENST00000620459 1144 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AC021422.1-201ENST00000621212 473 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC017104.5-201ENST00000637647 639 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 MIR193BHG-214ENST00000641765 509 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
COL6A1P12109 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 AC010624.4-201ENST00000597606 1351 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 BIN2P1-201ENST00000504996 1530 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
COL6A1P12109 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.9□□□□□ -1.3
COL6A1P12109 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
COL6A1P12109 MAPK10-365ENST00000641902 3825 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL6A1P12109 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
COL6A1P12109 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.9□□□□□ -1.3
COL6A1P12109 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL6A1P12109 ZNF29P-201ENST00000225587 168 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
COL6A1P12109 MIR375-201ENST00000362103 64 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL6A1P12109 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.9□□□□□ -1.3
COL6A1P12109 AMZ2P2-201ENST00000406819 1057 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AL023284.3-201ENST00000407767 334 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 DPPA2P2-201ENST00000418220 897 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 MTND4LP13-201ENST00000425022 298 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.9□□□□□ -1.3
COL6A1P12109 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6.9□□□□□ -1.3
COL6A1P12109 AC245884.2-201ENST00000426257 404 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.9□□□□□ -1.3
COL6A1P12109 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 AC006326.1-201ENST00000445465 787 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 MORF4-201ENST00000447135 971 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC6.9□□□□□ -1.3
COL6A1P12109 CABYRP1-201ENST00000465493 1045 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AL122020.1-201ENST00000472287 459 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AP000563.1-201ENST00000490865 758 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC091965.3-201ENST00000506236 208 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 AC108043.1-201ENST00000512696 574 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.9□□□□□ -1.3
COL6A1P12109 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC6.9□□□□□ -1.3
COL6A1P12109 UBTFL9-201ENST00000534504 1148 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 OR4U1P-201ENST00000554958 912 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL6A1P12109 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.9□□□□□ -1.3
COL6A1P12109 AL365400.2-201ENST00000605604 902 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.9□□□□□ -1.3
COL6A1P12109 AL159169.2-201ENST00000610061 1269 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC6.9□□□□□ -1.3
COL6A1P12109 AL445647.2-201ENST00000615170 130 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC231759.1-201ENST00000616455 597 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 AC078883.4-201ENST00000623218 367 ntBASIC6.9□□□□□ -1.3
COL6A1P12109 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
COL6A1P12109 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL6A1P12109 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.9□□□□□ -1.3
COL6A1P12109 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL6A1P12109 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.9□□□□□ -1.31
COL6A1P12109 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL6A1P12109 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL6A1P12109 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL6A1P12109 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL6A1P12109 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 MIR365B-201ENST00000362317 111 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL6A1P12109 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 UBE2V1P1-201ENST00000430836 445 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms