Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC078795.2-201ENST00000602835 1252 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL021368.3-201ENST00000607119 578 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC099676.1-201ENST00000608886 657 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 AC007342.8-201ENST00000623278 678 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA3O43365 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA3O43365 AC087821.2-201ENST00000637086 450 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 NCLP2-201ENST00000416078 1462 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 OFD1P10Y-201ENST00000434110 1433 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 FANCD2P2-201ENST00000437591 1400 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXA3O43365 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA3O43365 AL022323.4-201ENST00000623980 13120 ntBASIC5.55□□□□□ -1.52
HOXA3O43365 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
HOXA3O43365 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA3O43365 C1D-202ENST00000407324 1379 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXA3O43365 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 GMFG-201ENST00000253054 616 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 METTL21EP-201ENST00000298105 713 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC010894.1-201ENST00000313760 361 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
HOXA3O43365 RPL24P4-201ENST00000326586 421 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 RNA5SP308-201ENST00000362532 115 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 RNU6-1200P-201ENST00000384162 107 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC245036.1-201ENST00000391727 309 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AP000357.1-201ENST00000409926 1165 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 RN7SKP273-201ENST00000411392 314 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC022028.1-201ENST00000412054 408 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC013404.1-201ENST00000413068 249 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA3O43365 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 P2RY10P2-201ENST00000416730 913 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 OR6C64P-201ENST00000419708 825 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 PAICSP7-201ENST00000419829 962 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC009784.1-201ENST00000426484 460 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 NANOGP4-201ENST00000427230 913 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 KCTD9P1-201ENST00000430462 1167 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 KRTAP3-4P-201ENST00000430780 280 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC234064.1-201ENST00000436312 247 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 LINC00328-2P-201ENST00000436585 219 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 MTND2P40-201ENST00000436718 841 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC245291.3-201ENST00000443400 292 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXA3O43365 AL121578.2-201ENST00000448797 447 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 RPL21P134-201ENST00000453468 483 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 GLRXP3-201ENST00000470810 321 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 OR11I1P-201ENST00000486033 954 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 RPL29P23-201ENST00000486188 442 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXA3O43365 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA3O43365 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA3O43365 AC146944.3-201ENST00000509969 371 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 AC008837.2-201ENST00000513076 418 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 RNU2-30P-201ENST00000516209 141 ntBASIC5.54□□□□□ -1.52
HOXA3O43365 RNA5SP278-201ENST00000517055 102 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms