Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL021707.7-201ENST00000607991 416 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC211433.2-201ENST00000608433 387 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC096586.2-201ENST00000610260 441 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC021766.1-201ENST00000624404 741 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AP002512.4-202ENST00000641599 4530 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 MRE11P1-201ENST00000464884 2127 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 LINC02019-201ENST00000608605 2060 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC114786.1-201ENST00000512892 1415 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC113412.1-201ENST00000425840 504 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AL390879.1-201ENST00000439143 386 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 CYCSP51-201ENST00000443545 318 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 MTCYBP14-201ENST00000457471 715 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 RPL38P3-201ENST00000484463 213 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 PPP1R11P1-201ENST00000486095 376 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC009120.1-201ENST00000493458 473 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 OOSP1P2-201ENST00000579644 351 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC026523.2-201ENST00000625039 7739 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AC007842.1-201ENST00000597336 2039 ntBASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC3Q9BQI4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC130304.1-201ENST00000622942 2385 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AP004607.3-201ENST00000530354 3915 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 CASC19-248ENST00000641674 1356 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AL360270.2-201ENST00000562952 5985 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 RNU4-23P-201ENST00000362839 140 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 U3.7-201ENST00000363668 216 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MIR105-2-201ENST00000385083 81 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 RPL23AP17-201ENST00000401064 499 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AP000534.2-201ENST00000412729 568 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AL627308.1-201ENST00000435693 821 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AL390119.1-201ENST00000440329 312 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 RN7SL515P-201ENST00000463999 297 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 SLC25A51P1-201ENST00000468432 871 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 RN7SL799P-201ENST00000475891 298 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC087672.1-201ENST00000479876 766 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 DEFB109A-201ENST00000482450 265 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 TRBV5-2-201ENST00000489095 273 ntBASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC3Q9BQI4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms