Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PCNAP4-201ENST00000532690 730 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC096996.1-201ENST00000563813 325 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 DHFRP1-201ENST00000579682 559 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC008507.3-201ENST00000585753 472 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 RLIMP2-201ENST00000427891 1563 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC006484.1-201ENST00000435086 1884 ntBASIC5.7□□□□□ -1.5
VPS39Q96JC1 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS39Q96JC1 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS39Q96JC1 AC104964.3-201ENST00000606115 2860 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 RNA5SP326-201ENST00000363209 110 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 RNA5SP500-201ENST00000364486 119 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 OR13C3-201ENST00000374781 1108 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC005042.1-201ENST00000393397 800 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 RAB9AP4-201ENST00000415230 609 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 NIFKP3-201ENST00000417799 865 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 TMEM183AP1-205ENST00000432739 290 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 MTND2P40-201ENST00000436718 841 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 VN1R110P-201ENST00000438988 971 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 MED28P3-201ENST00000444288 531 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC023271.1-201ENST00000445936 1090 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 CST12P-201ENST00000457644 362 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 RN7SL197P-201ENST00000466981 299 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 RN7SL193P-201ENST00000491708 276 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL356801.1-201ENST00000559320 294 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 SNORD39.2-201ENST00000579995 76 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 FAM27E4-201ENST00000605259 342 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC090607.5-201ENST00000615692 224 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AC073592.6-201ENST00000624271 415 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 AL031595.2-201ENST00000624215 19071 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS39Q96JC1 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS39Q96JC1 LYARP1-201ENST00000436977 1501 ntBASIC5.69□□□□□ -1.5
VPS39Q96JC1 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms