Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 OR7A2P-201ENST00000304105 930 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HOXA1P49639 RNA5SP308-201ENST00000362532 115 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 RNU6-650P-201ENST00000365658 111 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 AL035405.1-201ENST00000400795 710 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 ZNF37CP-201ENST00000406795 241 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 RNA5SP231-201ENST00000410496 138 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 AL359885.1-201ENST00000415786 903 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 AC073310.1-201ENST00000423226 1033 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 MTND6P12-201ENST00000428247 522 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 ARL5AP3-201ENST00000439327 386 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 COL11A2P1-205ENST00000441798 676 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AL589765.3-201ENST00000446084 462 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 MORF4-201ENST00000447135 971 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC009244.1-201ENST00000450566 258 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 TVP23BP2-201ENST00000455082 615 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXA1P49639 RN7SL369P-201ENST00000477138 299 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC020779.1-201ENST00000478757 796 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 RN7SL413P-201ENST00000482700 297 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 MTCO2P9-201ENST00000503214 694 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXA1P49639 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC008945.1-201ENST00000505144 499 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 OSTC-204ENST00000512478 663 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXA1P49639 CYP4F27P-201ENST00000514557 494 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC110760.3-202ENST00000515177 371 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 RNA5SP418-201ENST00000515951 117 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 IGHV4-55-201ENST00000520889 368 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AL133399.1-201ENST00000527476 298 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXA1P49639 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 AL158211.1-201ENST00000566763 763 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 PPIAP14-201ENST00000577627 496 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA1P49639 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXA1P49639 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 AC012213.4-201ENST00000606457 354 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 AC016597.2-201ENST00000613256 341 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 SAMMSON-227ENST00000642114 1199 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
HOXA1P49639 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HOXA1P49639 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXA1P49639 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXA1P49639 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.95□□□□□ -1.62
HOXA1P49639 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
HOXA1P49639 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
HOXA1P49639 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXA1P49639 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXA1P49639 AC010894.1-201ENST00000313760 361 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXA1P49639 RNU1-5P-201ENST00000362684 144 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 RN7SKP145-201ENST00000363291 303 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 RN7SKP28-201ENST00000364770 305 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXA1P49639 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC4.95□□□□□ -1.62
HOXA1P49639 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HOXA1P49639 ST13P16-201ENST00000401760 781 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 AL353133.1-201ENST00000407695 401 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXA1P49639 GPS2P1-201ENST00000411761 986 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXA1P49639 RPL34P6-201ENST00000432390 345 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 EMC3-AS1-205ENST00000438698 534 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 NPM1P23-201ENST00000440193 849 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 AL513321.1-201ENST00000441175 761 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXA1P49639 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXA1P49639 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.95□□□□□ -1.62
HOXA1P49639 CABYRP1-201ENST00000465493 1045 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 RPS4XP17-201ENST00000479057 754 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 RN7SL267P-201ENST00000485107 261 ntBASIC4.95□□□□□ -1.62
HOXA1P49639 AC124945.1-201ENST00000485133 188 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms