Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 SEC11B-201ENST00000518383 499 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.68□□□□□ -1.5
HNF4AP41235 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.68□□□□□ -1.5
HNF4AP41235 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC134669.1-201ENST00000581275 672 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC090236.2-201ENST00000587933 1101 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 GMCL1P2-201ENST00000605230 823 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 AL133481.2-203ENST00000607558 139 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 AC026523.2-201ENST00000625039 7739 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 AF287957.1-201ENST00000607368 1595 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 RNU4-7P-201ENST00000364758 141 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 AL096711.1-201ENST00000404780 554 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.67□□□□□ -1.5
HNF4AP41235 GLUD1P9-201ENST00000420997 1173 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 CRIP1P1-201ENST00000427567 185 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.67□□□□□ -1.5
HNF4AP41235 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.67□□□□□ -1.5
HNF4AP41235 RPS12P17-201ENST00000438591 377 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 FRG2FP-204ENST00000453982 852 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.67□□□□□ -1.5
HNF4AP41235 PDCL3P4-201ENST00000489621 720 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 RN7SL284P-201ENST00000498823 275 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 WBP1LP3-201ENST00000523033 208 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.67□□□□□ -1.5
HNF4AP41235 AC008147.3-201ENST00000548666 354 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 AC107958.1-201ENST00000556576 290 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.67□□□□□ -1.5
HNF4AP41235 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.67□□□□□ -1.5
HNF4AP41235 GARSP1-201ENST00000570895 719 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 TXNP4-201ENST00000575018 310 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.67□□□□□ -1.5
HNF4AP41235 AC010487.1-201ENST00000594408 1172 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AL499605.1-201ENST00000604628 403 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC007620.3-201ENST00000608131 497 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 AC108673.3-201ENST00000609183 335 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 RMST_5.1-201ENST00000618704 126 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.67□□□□□ -1.5
HNF4AP41235 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HNF4AP41235 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 CASC19-281ENST00000642118 1554 ntBASIC5.67□□□□□ -1.5
HNF4AP41235 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.67□□□□□ -1.5
HNF4AP41235 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HNF4AP41235 AC087565.3-202ENST00000642085 1603 ntBASIC5.66□□□□□ -1.5
HNF4AP41235 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
HNF4AP41235 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
HNF4AP41235 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 SAMMSON-213ENST00000641336 1521 ntBASIC5.66□□□□□ -1.5
HNF4AP41235 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HNF4AP41235 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
HNF4AP41235 PEX12P1-201ENST00000400284 1048 ntBASIC5.66□□□□□ -1.5
HNF4AP41235 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.66□□□□□ -1.5
HNF4AP41235 AL354766.1-201ENST00000423396 542 ntBASIC5.66□□□□□ -1.5
HNF4AP41235 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms