Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX3P41225 AC087752.1-201ENST00000391360 558 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC092642.1-201ENST00000392417 425 ntBASIC5.34□□□□□ -1.55
SOX3P41225 RNA5SP178-201ENST00000410380 128 ntBASIC5.34□□□□□ -1.55
SOX3P41225 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 AL357752.1-201ENST00000412817 349 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 HMGB3P24-201ENST00000433260 622 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC242426.1-201ENST00000435270 960 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC015983.1-201ENST00000441577 373 ntBASIC5.34□□□□□ -1.55
SOX3P41225 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SOX3P41225 PPIAP20-201ENST00000449839 135 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 RPS23P6-201ENST00000466136 431 ntBASIC5.34□□□□□ -1.55
SOX3P41225 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SOX3P41225 AC022215.1-201ENST00000481770 362 ntBASIC5.34□□□□□ -1.55
SOX3P41225 PDCL3P4-201ENST00000489621 720 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX3P41225 SCARNA6.1-201ENST00000516989 238 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC078899.1-201ENST00000521432 1185 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 AC027544.3-201ENST00000535082 757 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC090424.1-201ENST00000535243 736 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.34□□□□□ -1.55
SOX3P41225 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX3P41225 RN7SL787P-201ENST00000613000 284 ntBASIC5.34□□□□□ -1.55
SOX3P41225 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SOX3P41225 MTCO1P1-201ENST00000624263 1081 ntBASIC5.34□□□□□ -1.55
SOX3P41225 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX3P41225 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SOX3P41225 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX3P41225 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
SOX3P41225 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX3P41225 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX3P41225 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SOX3P41225 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SOX3P41225 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
SOX3P41225 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.34□□□□□ -1.56
SOX3P41225 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.34□□□□□ -1.56
SOX3P41225 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SOX3P41225 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 Z95114.1-201ENST00000624264 14574 ntBASIC5.33□□□□□ -1.56
SOX3P41225 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SOX3P41225 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 RNU4-23P-201ENST00000362839 140 ntBASIC5.33□□□□□ -1.56
SOX3P41225 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SOX3P41225 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 NPM1P37-201ENST00000403105 874 ntBASIC5.33□□□□□ -1.56
SOX3P41225 RN7SKP286-201ENST00000410894 299 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AC093155.2-201ENST00000420734 937 ntBASIC5.33□□□□□ -1.56
SOX3P41225 RPL34P3-201ENST00000421454 338 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AC019205.1-201ENST00000421830 730 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 AC004129.2-201ENST00000457229 287 ntBASIC5.33□□□□□ -1.56
SOX3P41225 RPSAP37-201ENST00000470913 821 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AC090589.1-201ENST00000473109 362 ntBASIC5.33□□□□□ -1.56
SOX3P41225 RPS17P15-201ENST00000475609 349 ntBASIC5.33□□□□□ -1.56
SOX3P41225 RN7SL273P-201ENST00000481561 299 ntBASIC5.33□□□□□ -1.56
SOX3P41225 RPL32P33-201ENST00000487023 394 ntBASIC5.33□□□□□ -1.56
SOX3P41225 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 AC078878.1-201ENST00000539832 958 ntBASIC5.33□□□□□ -1.56
SOX3P41225 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 AC006115.2-201ENST00000596823 202 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.33□□□□□ -1.56
SOX3P41225 MIR6862-1-201ENST00000613016 70 ntBASIC5.33□□□□□ -1.56
SOX3P41225 MIR6862-2-201ENST00000614755 70 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AC027279.1-201ENST00000568885 4284 ntBASIC5.33□□□□□ -1.56
SOX3P41225 AP005435.3-201ENST00000531260 3198 ntBASIC5.33□□□□□ -1.56
SOX3P41225 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.33□□□□□ -1.56
SOX3P41225 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX3P41225 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SOX3P41225 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms