Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC073575.2-201ENST00000614212 627 ntBASIC9.01□□□□□ -0.97
CUX1P39880 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC9.01□□□□□ -0.97
CUX1P39880 UGP2-232ENST00000640075 567 ntTSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC9.01□□□□□ -0.97
CUX1P39880 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 MAK-202ENST00000354489 3941 ntTSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 AC132825.1-201ENST00000463573 2247 ntBASIC9.01□□□□□ -0.97
CUX1P39880 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
CUX1P39880 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
CUX1P39880 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC9□□□□□ -0.97
CUX1P39880 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC9□□□□□ -0.97
CUX1P39880 MIR105-1-201ENST00000385222 81 ntBASIC9□□□□□ -0.97
CUX1P39880 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 AC091390.1-201ENST00000433904 331 ntBASIC9□□□□□ -0.97
CUX1P39880 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC9□□□□□ -0.97
CUX1P39880 HNRNPDLP2-201ENST00000455248 751 ntBASIC9□□□□□ -0.97
CUX1P39880 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC9□□□□□ -0.97
CUX1P39880 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC9□□□□□ -0.97
CUX1P39880 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 MIR4737-201ENST00000583979 81 ntBASIC9□□□□□ -0.97
CUX1P39880 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 AC114774.1-201ENST00000507410 1770 ntBASIC9□□□□□ -0.97
CUX1P39880 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
CUX1P39880 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC9□□□□□ -0.97
CUX1P39880 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC9□□□□□ -0.97
CUX1P39880 snoU13.20-201ENST00000459180 104 ntBASIC9□□□□□ -0.97
CUX1P39880 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC9□□□□□ -0.97
CUX1P39880 AC122688.1-201ENST00000541494 223 ntBASIC9□□□□□ -0.97
CUX1P39880 PDCD6IPP2-207ENST00000566321 1069 ntBASIC9□□□□□ -0.97
CUX1P39880 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC9□□□□□ -0.97
CUX1P39880 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC9□□□□□ -0.97
CUX1P39880 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
CUX1P39880 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC8.99□□□□□ -0.97
CUX1P39880 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC8.99□□□□□ -0.97
CUX1P39880 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
CUX1P39880 AC009962.1-201ENST00000567327 3813 ntBASIC8.99□□□□□ -0.97
CUX1P39880 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 EPS15P1-202ENST00000459691 2071 ntBASIC8.99□□□□□ -0.97
CUX1P39880 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 NUDT19P3-201ENST00000404698 555 ntBASIC8.99□□□□□ -0.97
CUX1P39880 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
CUX1P39880 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC8.99□□□□□ -0.97
CUX1P39880 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC8.99□□□□□ -0.97
CUX1P39880 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC8.99□□□□□ -0.97
CUX1P39880 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 RPL36AP15-201ENST00000444514 266 ntBASIC8.99□□□□□ -0.97
CUX1P39880 NDUFA5P8-201ENST00000449019 346 ntBASIC8.99□□□□□ -0.97
CUX1P39880 AL513533.1-201ENST00000453728 415 ntBASIC8.99□□□□□ -0.97
CUX1P39880 AC092754.1-201ENST00000472975 479 ntBASIC8.99□□□□□ -0.97
CUX1P39880 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC8.99□□□□□ -0.97
CUX1P39880 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC8.99□□□□□ -0.97
CUX1P39880 XIST-210ENST00000602863 775 ntTSL 3 BASIC8.99□□□□□ -0.97
CUX1P39880 MEMO1P5-201ENST00000604810 406 ntBASIC8.99□□□□□ -0.97
CUX1P39880 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC8.99□□□□□ -0.97
CUX1P39880 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC8.99□□□□□ -0.97
CUX1P39880 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
CUX1P39880 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC8.99□□□□□ -0.97
CUX1P39880 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC8.99□□□□□ -0.97
CUX1P39880 OR4F13P-202ENST00000560066 2054 ntBASIC8.99□□□□□ -0.97
CUX1P39880 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
CUX1P39880 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
CUX1P39880 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 RIMKLBP2-201ENST00000424737 654 ntBASIC8.98□□□□□ -0.97
CUX1P39880 RPS4XP16-201ENST00000427198 791 ntBASIC8.98□□□□□ -0.97
CUX1P39880 AC073648.4-201ENST00000442655 781 ntBASIC8.98□□□□□ -0.97
CUX1P39880 KRTAP5-14P-201ENST00000502328 121 ntBASIC8.98□□□□□ -0.97
CUX1P39880 BTF3P13-201ENST00000513224 490 ntBASIC8.98□□□□□ -0.97
CUX1P39880 AL031320.1-201ENST00000604177 357 ntBASIC8.98□□□□□ -0.97
CUX1P39880 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC8.98□□□□□ -0.97
CUX1P39880 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
CUX1P39880 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC8.98□□□□□ -0.97
CUX1P39880 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC8.97□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms