Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC095055.1-201ENST00000603472 1113 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 MIR6748-201ENST00000610433 71 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 U1.25-201ENST00000614085 162 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 U1.34-201ENST00000618578 162 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 U1.31-201ENST00000620022 160 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.24□□□□□ -1.25
HOXC9P31274 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 AL353796.1-201ENST00000561542 3241 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 AC112255.1-201ENST00000624070 2493 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 AL031123.3-201ENST00000623345 1837 ntBASIC7.24□□□□□ -1.25
HOXC9P31274 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
HOXC9P31274 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.24□□□□□ -1.25
HOXC9P31274 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
HOXC9P31274 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
HOXC9P31274 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.24□□□□□ -1.25
HOXC9P31274 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
HOXC9P31274 DMD-205ENST00000359836 7339 ntTSL 5 BASIC7.24□□□□□ -1.25
HOXC9P31274 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
HOXC9P31274 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HOXC9P31274 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HOXC9P31274 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
HOXC9P31274 OR4F13P-202ENST00000560066 2054 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC7.23□□□□□ -1.25
HOXC9P31274 RN7SKP216-201ENST00000411050 312 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 AL691447.1-201ENST00000419456 387 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 AL121578.1-201ENST00000428051 892 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 PA2G4P6-201ENST00000438325 1197 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC7.23□□□□□ -1.25
HOXC9P31274 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC7.23□□□□□ -1.25
HOXC9P31274 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 AC122688.1-201ENST00000541494 223 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC7.23□□□□□ -1.25
HOXC9P31274 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HOXC9P31274 AC114947.2-201ENST00000565748 2125 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC7.23□□□□□ -1.25
HOXC9P31274 AC005341.1-201ENST00000571086 708 ntBASIC7.23□□□□□ -1.25
HOXC9P31274 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC7.23□□□□□ -1.25
HOXC9P31274 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HOXC9P31274 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HOXC9P31274 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC7.23□□□□□ -1.25
HOXC9P31274 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC7.23□□□□□ -1.25
HOXC9P31274 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HOXC9P31274 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
HOXC9P31274 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 AC097634.1-201ENST00000604491 2467 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.22□□□□□ -1.25
HOXC9P31274 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
HOXC9P31274 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 MRRF-207ENST00000373729 870 ntTSL 3 BASIC7.22□□□□□ -1.25
HOXC9P31274 Y_RNA.625-201ENST00000411256 107 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.22□□□□□ -1.25
HOXC9P31274 RPL12P17-201ENST00000432393 498 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.22□□□□□ -1.25
HOXC9P31274 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 RPS4XP20-201ENST00000505751 772 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 RN7SKP66-201ENST00000516681 231 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 AC013701.1-201ENST00000522657 465 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC7.22□□□□□ -1.25
HOXC9P31274 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC7.22□□□□□ -1.25
HOXC9P31274 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC7.22□□□□□ -1.25
HOXC9P31274 XIST-210ENST00000602863 775 ntTSL 3 BASIC7.22□□□□□ -1.25
HOXC9P31274 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
HOXC9P31274 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
HOXC9P31274 AL078621.3-201ENST00000623707 2042 ntBASIC7.22□□□□□ -1.25
HOXC9P31274 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC7.22□□□□□ -1.25
HOXC9P31274 AC068769.1-201ENST00000474767 2426 ntBASIC7.21□□□□□ -1.25
HOXC9P31274 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC7.21□□□□□ -1.25
HOXC9P31274 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
HOXC9P31274 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC7.21□□□□□ -1.25
HOXC9P31274 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
HOXC9P31274 AL589993.1-201ENST00000407450 2524 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
HOXC9P31274 RNU4-4P-201ENST00000364588 130 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 GNG5P2-201ENST00000372054 207 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 RNU6ATAC7P-201ENST00000408111 127 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC7.21□□□□□ -1.26
HOXC9P31274 AC093162.1-201ENST00000419682 124 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC7.21□□□□□ -1.26
HOXC9P31274 AC109464.1-201ENST00000511091 819 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 CDH12P4-201ENST00000517835 295 ntBASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms