Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RPS4XP14-201ENST00000493072 781 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 RN7SL284P-201ENST00000498823 275 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 NPM1P21-201ENST00000513394 762 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC021146.10-201ENST00000515628 706 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 AC137627.1-201ENST00000545761 289 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC4P09017 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 AC016839.1-201ENST00000578162 867 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC060780.2-201ENST00000589047 198 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 SAMMSON-209ENST00000641222 1100 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC005261.6-201ENST00000623072 1387 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXC4P09017 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXC4P09017 MT-RNR2-201ENST00000387347 1559 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 AC090220.1-201ENST00000593078 1699 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
HOXC4P09017 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXC4P09017 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXC4P09017 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 AC025470.1-201ENST00000510053 2032 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
HOXC4P09017 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
HOXC4P09017 GABARAPL3-201ENST00000412799 354 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 METTL15P3-201ENST00000415522 1221 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC4P09017 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.49□□□□□ -1.53
HOXC4P09017 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXC4P09017 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXC4P09017 RN7SKP253-201ENST00000516424 309 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC4P09017 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC4P09017 FKBP1AP1-201ENST00000594588 318 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC4P09017 AC069542.2-201ENST00000624816 216 ntBASIC5.49□□□□□ -1.53
HOXC4P09017 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXC4P09017 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
HOXC4P09017 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
HOXC4P09017 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
HOXC4P09017 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
HOXC4P09017 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC4P09017 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 AC005042.1-201ENST00000393397 800 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 MIR1286-201ENST00000408112 78 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 OR10T1P-201ENST00000424327 947 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 CYCSP12-201ENST00000437729 300 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 COPS8P2-201ENST00000473228 627 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC4P09017 OR2AO1P-201ENST00000476497 403 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 AC074386.1-201ENST00000476560 767 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXC4P09017 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.48□□□□□ -1.53
HOXC4P09017 AC078878.1-201ENST00000539832 958 ntBASIC5.48□□□□□ -1.53
HOXC4P09017 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXC4P09017 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXC4P09017 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXC4P09017 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXC4P09017 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
HOXC4P09017 OR4F13P-202ENST00000560066 2054 ntBASIC5.47□□□□□ -1.53
HOXC4P09017 AC007938.2-201ENST00000604666 2634 ntBASIC5.47□□□□□ -1.53
HOXC4P09017 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
HOXC4P09017 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXC4P09017 HSPD1P7-201ENST00000447985 1686 ntBASIC5.47□□□□□ -1.53
HOXC4P09017 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms