Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AP003400.2-201ENST00000624036 666 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC123769.1-201ENST00000530992 3192 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC018809.2-201ENST00000602436 3823 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.62□□□□□ -1.51
LHX3Q9UBR4 AC138907.8-201ENST00000623981 2256 ntBASIC5.62□□□□□ -1.51
LHX3Q9UBR4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC239868.2-201ENST00000564237 4527 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 RN7SKP6-201ENST00000364795 319 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 MIR551A-201ENST00000385042 96 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC073072.2-201ENST00000447425 348 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC006206.1-201ENST00000544842 3387 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 H3F3BP2-201ENST00000583907 357 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC087468.1-201ENST00000604365 630 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 MIR6768-201ENST00000610734 72 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 AC015712.7-201ENST00000615211 635 ntBASIC5.61□□□□□ -1.51
LHX3Q9UBR4 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LHX3Q9UBR4 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 RNU4-2-201ENST00000365668 141 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SNORA16A-201ENST00000384342 137 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 MIR143-201ENST00000385300 106 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC021876.1-201ENST00000425959 359 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AZGP1P2-201ENST00000454506 345 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AP002371.1-201ENST00000463604 433 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC100832.1-201ENST00000471945 383 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 RN7SL184P-201ENST00000488308 297 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC090638.1-201ENST00000498296 909 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 RN7SL284P-201ENST00000498823 275 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 MTCO3P42-201ENST00000509488 518 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 MTCO3P39-201ENST00000514812 518 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC234775.3-201ENST00000564612 656 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AP005901.4-201ENST00000577336 569 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms