Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CLUHP10-201ENST00000631979 980 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA3P55318 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 NEAT1-202ENST00000501122 22743 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 MTND5P12-201ENST00000502851 1449 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC217777.1-201ENST00000570034 1471 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
FOXA3P55318 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXA3P55318 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 AL080312.1-201ENST00000256654 824 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
FOXA3P55318 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
FOXA3P55318 RN7SKP108-201ENST00000411367 328 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 OR52N3P-201ENST00000413417 934 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC007738.1-201ENST00000413892 348 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 HSPE1P16-201ENST00000426640 348 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 GAPDHP19-201ENST00000431768 1005 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AL158214.1-201ENST00000444423 404 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AL445991.1-201ENST00000450381 475 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AL034369.1-201ENST00000453808 477 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 GEMIN2P1-201ENST00000454246 752 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC005165.2-201ENST00000466070 380 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 RN7SL790P-201ENST00000474043 298 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC073610.1-201ENST00000489971 396 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 RPS12P31-201ENST00000491419 398 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA3P55318 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.12□□□□□ -1.75
FOXA3P55318 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 GAPDHP71-201ENST00000511530 1003 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 ZNF519P4-201ENST00000514008 125 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 SCARNA20.4-201ENST00000516969 131 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC139365.2-201ENST00000517972 253 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC100784.1-201ENST00000522790 310 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA3P55318 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC4.12□□□□□ -1.75
FOXA3P55318 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 OR1E3-201ENST00000575608 948 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 SNURF-202ENST00000577949 650 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
FOXA3P55318 AP005262.1-201ENST00000582646 997 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 MIR4260-201ENST00000583107 67 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA3P55318 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA3P55318 AC108738.1-201ENST00000603703 237 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC012368.3-201ENST00000604190 219 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC090607.5-201ENST00000615692 224 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 BNIP3P41-202ENST00000616656 861 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA3P55318 AC000374.1-201ENST00000434698 1745 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
FOXA3P55318 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXA3P55318 OR4G1P-202ENST00000641173 1788 ntBASIC4.12□□□□□ -1.75
FOXA3P55318 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXA3P55318 ELOC-205ENST00000520210 1451 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
FOXA3P55318 SNORD56.6-201ENST00000384569 71 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
FOXA3P55318 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 OOSP1-201ENST00000398992 1270 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 RPL10P10-201ENST00000403509 664 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AL009179.1-201ENST00000406085 265 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AL117344.1-201ENST00000407196 616 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 SETP15-201ENST00000412724 337 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA3P55318 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms