Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 OR6M2P-201ENST00000529831 871 ntBASIC7.11□□□□□ -1.27
MRE11P49959 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MRE11P49959 ASB8-203ENST00000535988 679 ntTSL 2 BASIC7.11□□□□□ -1.27
MRE11P49959 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 MTND3P12-201ENST00000559068 328 ntBASIC7.11□□□□□ -1.27
MRE11P49959 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MRE11P49959 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC7.11□□□□□ -1.27
MRE11P49959 AL049838.1-201ENST00000563647 981 ntBASIC7.11□□□□□ -1.27
MRE11P49959 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 AC090286.3-201ENST00000573133 187 ntBASIC7.11□□□□□ -1.27
MRE11P49959 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 AC090616.1-201ENST00000583895 447 ntBASIC7.11□□□□□ -1.27
MRE11P49959 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.11□□□□□ -1.27
MRE11P49959 Xist_exon4.1-201ENST00000615964 126 ntBASIC7.11□□□□□ -1.27
MRE11P49959 AC068787.1-201ENST00000623908 691 ntBASIC7.11□□□□□ -1.27
MRE11P49959 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
MRE11P49959 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
MRE11P49959 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
MRE11P49959 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
MRE11P49959 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC7.11□□□□□ -1.27
MRE11P49959 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC7.1□□□□□ -1.27
MRE11P49959 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC7.1□□□□□ -1.27
MRE11P49959 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC7.1□□□□□ -1.27
MRE11P49959 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
MRE11P49959 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 AC023490.2-201ENST00000359859 470 ntBASIC7.1□□□□□ -1.27
MRE11P49959 SNORA74A-201ENST00000364089 198 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.1□□□□□ -1.27
MRE11P49959 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.1□□□□□ -1.27
MRE11P49959 TRAV35-201ENST00000390462 330 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC069282.1-201ENST00000411911 526 ntBASIC7.1□□□□□ -1.27
MRE11P49959 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC7.1□□□□□ -1.27
MRE11P49959 EEF1B2P8-201ENST00000414101 671 ntBASIC7.1□□□□□ -1.27
MRE11P49959 PCNPP4-201ENST00000414817 517 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.1□□□□□ -1.27
MRE11P49959 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC7.1□□□□□ -1.27
MRE11P49959 AL445528.1-201ENST00000426330 420 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC7.1□□□□□ -1.27
MRE11P49959 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC7.1□□□□□ -1.27
MRE11P49959 AC004854.1-201ENST00000440356 349 ntBASIC7.1□□□□□ -1.27
MRE11P49959 MTND1P31-201ENST00000449206 961 ntBASIC7.1□□□□□ -1.27
MRE11P49959 VPS25P1-201ENST00000455691 508 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC7.1□□□□□ -1.27
MRE11P49959 AC021146.5-201ENST00000503544 545 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.1□□□□□ -1.27
MRE11P49959 AL158068.1-201ENST00000506116 616 ntBASIC7.1□□□□□ -1.27
MRE11P49959 NDUFB5P1-201ENST00000508134 564 ntBASIC7.1□□□□□ -1.27
MRE11P49959 RNU6-760P-201ENST00000516078 97 ntBASIC7.1□□□□□ -1.27
MRE11P49959 RN7SKP196-201ENST00000516267 345 ntBASIC7.1□□□□□ -1.27
MRE11P49959 RNU6-964P-201ENST00000516524 69 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AP001636.2-201ENST00000525517 696 ntBASIC7.1□□□□□ -1.27
MRE11P49959 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 AC087888.1-201ENST00000550884 1254 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC093510.2-201ENST00000562820 896 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC7.1□□□□□ -1.27
MRE11P49959 AC005412.1-201ENST00000580812 1049 ntBASIC7.1□□□□□ -1.27
MRE11P49959 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.1□□□□□ -1.27
MRE11P49959 AC091057.3-201ENST00000602684 733 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AC012175.1-201ENST00000603755 531 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AL022394.1-201ENST00000606979 292 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AP001033.2-201ENST00000609701 1003 ntBASIC7.1□□□□□ -1.27
MRE11P49959 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.1□□□□□ -1.27
MRE11P49959 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC7.1□□□□□ -1.27
MRE11P49959 AL445493.3-201ENST00000619568 477 ntBASIC7.1□□□□□ -1.27
MRE11P49959 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
MRE11P49959 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MRE11P49959 AC010132.4-201ENST00000569883 1368 ntBASIC7.09□□□□□ -1.27
MRE11P49959 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC7.09□□□□□ -1.27
MRE11P49959 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
MRE11P49959 DMD-228ENST00000541735 7080 ntTSL 5 BASIC7.09□□□□□ -1.27
MRE11P49959 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
MRE11P49959 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
MRE11P49959 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
MRE11P49959 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MRE11P49959 OR4K17-201ENST00000315543 1032 ntBASIC7.09□□□□□ -1.27
MRE11P49959 RN7SKP74-201ENST00000362849 309 ntBASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms