Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FCF1P6-201ENST00000456841 595 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.8□□□□□ -1.32
SMARCA1P28370 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC6.8□□□□□ -1.32
SMARCA1P28370 MIR2117-201ENST00000516780 80 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.8□□□□□ -1.32
SMARCA1P28370 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.8□□□□□ -1.32
SMARCA1P28370 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC6.8□□□□□ -1.32
SMARCA1P28370 AL158211.1-201ENST00000566763 763 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 ZNF322P1-201ENST00000568013 1209 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 OR1AB1P-201ENST00000585564 761 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 AC015911.5-201ENST00000587076 451 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 AC008147.4-201ENST00000617570 1204 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 AC069234.4-201ENST00000621276 412 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.8□□□□□ -1.32
SMARCA1P28370 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.8□□□□□ -1.32
SMARCA1P28370 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
SMARCA1P28370 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.8□□□□□ -1.32
SMARCA1P28370 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.8□□□□□ -1.32
SMARCA1P28370 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 AC087565.3-202ENST00000642085 1603 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC116158.1-201ENST00000560231 2129 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AL442128.2-201ENST00000620246 1824 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.79□□□□□ -1.32
SMARCA1P28370 LYPLA1P3-201ENST00000402650 695 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 RN7SKP29-201ENST00000410957 272 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 MTND4P11-201ENST00000417020 1058 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 DEFA9P-201ENST00000433042 285 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
SMARCA1P28370 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AP006222.1-205ENST00000450734 457 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 HLA-DPA3-207ENST00000454398 229 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 snoU109.5-201ENST00000516231 132 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 CD69-203ENST00000536709 1020 ntTSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC126615.2-201ENST00000553003 515 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 GARSP1-201ENST00000570895 719 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.79□□□□□ -1.32
SMARCA1P28370 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC6.79□□□□□ -1.32
SMARCA1P28370 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.79□□□□□ -1.32
SMARCA1P28370 OR8G3P-202ENST00000641572 1255 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.79□□□□□ -1.32
SMARCA1P28370 AL662795.2-201ENST00000624252 3706 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.79□□□□□ -1.32
SMARCA1P28370 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.79□□□□□ -1.32
SMARCA1P28370 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SMARCA1P28370 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.79□□□□□ -1.32
SMARCA1P28370 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.78□□□□□ -1.32
SMARCA1P28370 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SMARCA1P28370 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.78□□□□□ -1.32
SMARCA1P28370 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.78□□□□□ -1.32
SMARCA1P28370 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC6.78□□□□□ -1.32
SMARCA1P28370 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.78□□□□□ -1.32
SMARCA1P28370 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
SMARCA1P28370 MTHFD2P5-201ENST00000320415 844 ntBASIC6.78□□□□□ -1.32
SMARCA1P28370 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 RNU6-40P-201ENST00000384254 107 ntBASIC6.78□□□□□ -1.32
SMARCA1P28370 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 RPS26P38-201ENST00000414476 348 ntBASIC6.78□□□□□ -1.32
SMARCA1P28370 RAB9AP4-201ENST00000415230 609 ntBASIC6.78□□□□□ -1.32
SMARCA1P28370 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC6.78□□□□□ -1.32
SMARCA1P28370 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC6.78□□□□□ -1.32
SMARCA1P28370 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC6.78□□□□□ -1.32
SMARCA1P28370 ARAFP1-201ENST00000422172 605 ntBASIC6.78□□□□□ -1.32
SMARCA1P28370 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.78□□□□□ -1.32
SMARCA1P28370 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SMARCA1P28370 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC6.78□□□□□ -1.32
SMARCA1P28370 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.78□□□□□ -1.32
SMARCA1P28370 AC023141.8-201ENST00000442554 208 ntBASIC6.78□□□□□ -1.32
SMARCA1P28370 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.78□□□□□ -1.32
SMARCA1P28370 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC6.78□□□□□ -1.32
SMARCA1P28370 OSTCP1-201ENST00000455507 450 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms